Lasiodiplodia mitidjana sp. nov. and other Botryosphaeriaceae species causing branch canker and dieback of Citrus sinensis in Algeria
Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
32433708
PubMed Central
PMC7239386
DOI
10.1371/journal.pone.0232448
PII: PONE-D-19-29810
Knihovny.cz E-zdroje
- MeSH
- Ascomycota klasifikace genetika patogenita MeSH
- DNA fungální genetika MeSH
- druhová specificita MeSH
- fylogeneze MeSH
- nemoci rostlin mikrobiologie MeSH
- pomerančovník čínský mikrobiologie MeSH
- virulence MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Alžírsko MeSH
- Názvy látek
- DNA fungální MeSH
Several Botryosphaeriaceae species are known to occur worldwide, causing dieback, canker and fruit rot on various hosts. Surveys conducted in ten commercial citrus orchards in the northern region of Algeria revealed five species of Botryosphaeriaceae belonging to three genera associated with diseased trees. Morphological and cultural characteristics as well as phylogenetic analyses of the internal transcribed spacer (ITS) region and the translation elongation factor 1-alpha (tef1-α) identified Diplodia mutila, Diplodia seriata, Dothiorella viticola, Lasiodiplodia mediterranea and a novel species which is here described as Lasiodiplodia mithidjana sp. nov.. Of these, L. mithidjana (14.1% of the samples) and L. mediterranea (13% of the samples) were the most widespread and abundant species. Pathogenicity tests revealed that L. mediterranea and D. seriata were the most aggressive species on citrus shoots. This study highlights the importance of Botryosphaeriaceae species as agents of canker and dieback of citrus trees in Algeria.
Zobrazit více v PubMed
FAO. 2020. Available from: http://www.fao.org. [accessed March 18th, 2020].
MADR. National agricultural statistics 2015. Algiers: Ministry of Agriculture and Rural Development; 2015.
Khanchouch K, Pane A, Chriki A, Cacciola SO. Major and emerging fungal diseases of Citrus in the Mediterranean region. Citrus Pathology. 2017:1 10.5772/66943. DOI
Bové JM. Virus and virus-like diseases of citrus in the Near East region. Rome: FAO; 1995.
Cohen M. Diagnosis of young tree decline, blight and sand hill decline of citrus by measurement of water uptake using gravity injection. Plant Disease Reporter. 1974;58(9):801–805.
Brlansky R, Lee R, Collins M. Structural comparison of xylem occlusions in the trunks of Citrus trees with blight and other decline diseases. Phytopathology. 1985;75(2):145–150. 10.1094/Phyto-75-145. DOI
Elena K, Fischer M, Dimou D, Dimou DM. Fomitiporia mediterranea infecting citrus trees in Greece. Phytopathologia Mediterranea. 2006;45(1):35–39. 10.14601/Phytopathol_Mediterr-1813. DOI
Polizzi G, Aiello D, Vitale A, Giuffrida F, Groenewald J, Crous P. First report of shoot blight, canker, and gummosis caused by Neoscytalidium dimidiatum on citrus in Italy. Plant Disease. 2009;93(11):1215–1215. 10.1094/PDIS-93-11-1215A PubMed DOI
Huang F, Hou X, Dewdney MM, Fu Y, Chen G, Hyde KD, et al. Diaporthe species occurring on citrus in China. Fungal Diversity. 2013;61(1):237–250. 10.1007/s13225-013-0245-6. DOI
Timmer L, Solel Z, Orozco-Santos M. Alternaria brown spot of mandarins. Compendium of citrus diseases. 2000;2:19–2000.
Udayanga D, Castlebury L, Rossman A, Hyde K. Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis. Persoonia: Molecular Phylogeny and Evolution of Fungi. 2014;32:83–101. 10.3767/003158514X679984 PubMed DOI PMC
Guarnaccia V, Crous PW. Species of Diaporthe on Camellia and Citrus in the Azores Islands. Phytopathologia Mediterranea. 2018;57(2):307−319. 10.14601/Phytopathol_Mediterr-23254. DOI
Guarnaccia V, Crous PW. Emerging citrus diseases in Europe caused by species of Diaporthe. IMA fungus. 2017;8(2):317–334. 10.5598/imafungus.2017.08.02.07 PubMed DOI PMC
Polizzi G, editor Magnano di San Lio G., Catara A., 1992. Dry root rot of citranges in Italy. Proceedings of the International Society of Citriculture VII International Citrus Congress, Acireale 1992; 1992.
Hannachi I, Rezgui S, Cherif M. First report of mature citrus trees being affected by Fusarium wilt in Tunisia. Plant Disease. 2014;98(4):566 10.1094/PDIS-12-12-1134-PDN PubMed DOI
Sandoval-Denis M, Guarnaccia V, Polizzi G, Crous P. Symptomatic Citrus trees reveal a new pathogenic lineage in Fusarium and two new Neocosmospora species. Persoonia: Molecular Phylogeny and Evolution of Fungi. 2018;40:1–25. 10.3767/persoonia.2018.40.01 PubMed DOI PMC
Mayorquin JS, Wang DH, Twizeyimana M, Eskalen A. Identification, distribution, and pathogenicity of Diatrypaceae and Botryosphaeriaceae associated with Citrus branch canker in the southern California desert. Plant Disease. 2016;100(12):2402–2413. 10.1094/PDIS-03-16-0362-RE PubMed DOI
Adesemoye AO, Eskalen A. First Report of Spencermartinsia viticola, Neofusicoccum australe, and N. parvum Causing Branch Canker of Citrus in California. Plant Disease. 2011;95(6):770 10.1094/PDIS-02-11-0092 PubMed DOI
Trouillas FP, Pitt WM, Sosnowski MR, Huang R, Peduto F, Loschiavo A, et al. Taxonomy and DNA phylogeny of Diatrypaceae associated with Vitis vinifera and other woody plants in Australia. Fungal Diversity. 2011;49(1):203–223. 10.1007/s13225-011-0094-0. DOI
Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ,et al. The Botryosphaeriaceae: genera and species known from culture. Studies in Mycology. 2013;76(1):51–167. 10.3114/sim0021 PubMed DOI PMC
Burgess TI, Tan YP, Garnas J, Edwards J, Scarlett KA, Shuttleworth LA, et al. Current status of the Botryosphaeriaceae in Australia. Australasian Plant Pathology. 2018;48(1):35–44. 10.1007/s13313-018-0577-5. DOI
Hamrouni N, Nouri M, Trouillas F, Said A, Sadfi-Zouaoui N, Hajlaoui M. Dothiorella gummosis caused by Dothiorella viticola, first record from citrus in Tunisia. New Disease Reports. 2018;38:10–10. 10.5197/j.2044-0588.2018.038.010. DOI
Adesemoye AO, Mayorquin JS, Wang DH, Twizeyimana M, Lynch SC, Eskalen A. Identification of Species of Botryosphaeriaceae Causing Bot Gummosis in Citrus in California. Plant Dis. 2014;98(1):55–61. 10.1094/PDIS-05-13-0492-RE PubMed DOI
Abdollahzadeh J, Javadi A, Mohammadi Goltapeh E, Zare R, Phillips AJ. Phylogeny and morphology of four new species of Lasiodiplodia from Iran. Persoonia. 2010;25:1–10. 10.3767/003158510X524150 PubMed DOI PMC
Berraf A, Péros J-P. Importance of Eutypa dieback and esca in Algeria and structure of the associated fungal community. OENO One. 2005;39(3):121–128. 10.20870/oeno-one.2005.39.3.896. DOI
Ammad F, Benchabane M, Toumi M, Belkacem N, Guesmi A, Ameur C,et al. Occurrence of Botryosphaeriaceae species associated with grapevine dieback in Algeria. Turkish Journal of Agriculture and Forestry. 2014;38(6):865–876. 10.3906/tar-1404-15. DOI
Berraf-Tebbal A, Guereiro MA, Phillips AJ. Phylogeny of Neofusicoccum species associated with grapevine trunk diseases in Algeria, with description of Neofusicoccum algeriense sp. nov. Phytopathologia Mediterranea. 2014;53(3):416–427. https://doi.org/14385/14273.
Smahi H, Belhoucine-Guezouli L, Berraf-Tebbal A, Chouih S, Arkam M, Franceschini A, et al. Molecular characterization and pathogenicity of Diplodia corticola and other Botryosphaeriaceae species associated with canker and dieback of Quercus suber in Algeria. Mycosphere. 2017;8(2):1261–1272. 10.5943/mycosphere/8/2/10. DOI
Azouaoui-Idjer G, Della Rocca G, Pecchioli A, Bouznad Z, Danti R. First report of Botryosphaeria iberica associated with dieback and tree mortality of Monterey cypress (Cupressus macrocarpa) in Algeria. Plant Disease. 2012;96(7):1073–1073. 10.1094/PDIS-10-11-0901-PDN PubMed DOI
Linaldeddu BT, Deidda A, Scanu B, Franceschini A, Serra S, Berraf-Tebbal A, et al. Diversity of Botryosphaeriaceae species associated with grapevine and other woody hosts in Italy, Algeria and Tunisia, with descriptions of Lasiodiplodia exigua and Lasiodiplodia mediterranea sp. nov. Fungal Diversity. 2014;71(1):201–214. 10.1007/s13225-014-0301-x. DOI
Santos J, Phillips A. Resolving the complex of Diaporthe (Phomopsis) species occurring on Foeniculum vulgare in Portugal. Fungal Diversity. 2009;34(11):111–125.
Alves A, Correia A, Luque J, Phillips A. Botryosphaeria corticola, sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. Mycologia. 2004;96(3):598–613. PubMed
White TJ, Bruns T, Lee S, Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR protocols: a guide to methods and applications. 1990;18(1):315–322.
O'Donnell K, Cigelnik E, Nirenberg HI. Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia. 1998;90(3):465–493. 10.1080/00275514.1998.12026933. DOI
Alves A, Crous PW, Correia A, Phillips A. Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. Fungal Diversity. 2008;28:1–13. 10.2307/3762177. DOI
Hall TA, editor BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic acids symposium series; 1999: [London: ]: Information Retrieval Ltd., 1979. –2000.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 1990;215(3):403–410. 10.1016/S0022-2836(05)80360-2 PubMed DOI
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic acids research. 1997;25(24):4876–4882. 10.1093/nar/25.24.4876 PubMed DOI PMC
Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol. 2018;35(6):1547–1549. 10.1093/molbev/msy096 PubMed DOI PMC
Yang T, Groenewald JZ, Cheewangkoon R, Jami F, Abdollahzadeh J, Lombard L,et al. Families, genera, and species of Botryosphaeriales. Fungal biology. 2017;121(4):322–346. 10.1016/j.funbio.2016.11.001 PubMed DOI
Raimondo F, Nardini A, Salleo S, Cacciola SO, Gullo MAL. A tracheomycosis as a tool for studying the impact of stem xylem dysfunction on leaf water status and gas exchange in Citrus aurantium L. Trees. 2010;24(2):327–333. 10.1007/s00468-009-0402-4. DOI
Slippers B, Johnson GI, Crous PW, Coutinho TA, Wingfield BD, Wingfield MJ. Phylogenetic and morphological re-evaluation of the Botryosphaeria species causing diseases of Mangifera indica. Mycologia. 2005;97(1):99–110. 10.3852/mycologia.97.1.99 PubMed DOI
Sakalidis ML, Ray JD, Lanoiselet V, Hardy GES, Burgess TI. Pathogenic Botryosphaeriaceae associated with Mangifera indica in the Kimberley region of Western Australia. European journal of plant pathology. 2011;130(3):379–91. 10.1007/s10658-011-9760-z. DOI
Rodríguez-Gálvez E, Guerrero P, Barradas C, Crous PW, Alves A. Phylogeny and pathogenicity of Lasiodiplodia species associated with dieback of mango in Peru. Fungal biology. 2017;121(4):452–465. 10.1016/j.funbio.2016.06.004 PubMed DOI
Ismail A, Cirvilleri G, Polizzi G, Crous P, Groenewald J, Lombard L. Lasiodiplodia species associated with dieback disease of mango (Mangifera indica) in Egypt. Australasian Plant Pathology. 2012;41(6):649–660. 10.1007/s13313-012-0163-1. DOI
Marques MW, Lima NB, de Morais MA, Barbosa MAG, Souza BO, Michereff SJ,et al. Species of Lasiodiplodia associated with mango in Brazil. Fungal Diversity. 2013;61(1):181–93. 10.1007/s13225-013-0231-z. DOI
Trakunyingcharoen T, Lombard L, Groenewald JZ, Cheewangkoon R, To-Anun C, Crous P. Caulicolous Botryosphaeriales from Thailand. Persoonia: Molecular Phylogeny and Evolution of Fungi. 2015;34:87–99. 10.3767/003158515X685841 PubMed DOI PMC
Andolfi A, Basso S, Giambra S, Conigliaro G, Lo Piccolo S, Alves A,et al. Lasiolactols A and B produced by the grapevine fungal pathogen Lasiodiplodia mediterranea. Chemistry & biodiversity. 2016;13(4):395–402. 10.1002/cbdv.201500104 PubMed DOI
Phillips A, Alves A, Pennycook S, Johnston P, Ramaley A, Akulov A, et al. Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia: Molecular Phylogeny and Evolution of Fungi. 2008;21:29–55. 10.3767/003158508X340742 PubMed DOI PMC
Slippers B, Boissin E, Phillips A, Groenewald JZ, Lombard L, Wingfield MJ, et al. Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Studies in Mycology. 2013;76(1):31–49. 10.3114/sim0020 PubMed DOI PMC
Dissanayake A, Phillips A, Li X, Hyde K. Botryosphaeriaceae: current status of genera and species. Mycosphere. 2016;7(7):1001–1073. 10.5943/mycosphere/si/1b/13. DOI
Chakusary MK, Mohammadi H, Khodaparast SA. Diversity and pathogenicity of Botryosphaeriaceae species on forest trees in the north of Iran. European Journal of Forest Research. 2019:1–20. 10.1007/s10342-019-01200-7. DOI
Chen S, Morgan DP, Hasey JK, Anderson K, Michailides TJ. Phylogeny, morphology, distribution, and pathogenicity of Botryosphaeriaceae and Diaporthaceae from English Walnut in California. Plant Disease. 2014;98(5):636–652. 10.1094/PDIS-07-13-0706-RE PubMed DOI
Lazzizera C, Frisullo S, Alves A, Lopes J, Phillips A. Phylogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum sp. nov. Fungal Divers. 2008;31:63–71.
Phillips AJ, Crous PW, Alves A. Diplodia seriata, the anamorph of “Botryosphaeria” obtusa. Fungal Diversity. 2007;25:141–155.
Úrbez-Torres J, Peduto F, Vossen P, Krueger W, Gubler W. Olive twig and branch dieback: etiology, incidence, and distribution in California. Plant Disease. 2013;97(2):231–244. 10.1094/PDIS-04-12-0390-RE PubMed DOI
Crespo M, Moral J, Michailides T, Trouillas F. First report of black rot on apple fruit caused by Diplodia seriata in California. Plant Disease. 2018;102(4):824 10.1094/PDIS-07-17-1023-PDN. DOI
Kim Y, Kwak J, Aguilar C, Xiao C. First report of black rot on apple fruit caused by Diplodia seriata in Washington State. Plant Disease. 2016;100(7):1499–1499. 10.1094/PDIS-12-15-1463-PDN. DOI
Díaz GA, Latorre BA, Ferrada E, Lolas M. Identification and characterization of Diplodia mutila, D. seriata, Phacidiopycnis washingtonensis and Phacidium lacerum obtained from apple (Malusx domestica) fruit rot in Maule region, Chile. European journal of plant pathology. 2019;153(1):211–225. 10.1007/s10658-018-01640-8. DOI
Giraud M. Apple Black Rot. Infos-Ctifl. 2009(257):36–41.
Weber R, Dralle N. Fungi associated with blossom-end rot of apples in Germany. European Journal of Horticultural Science. 2013;78:97–105.
Sessa L, Abreo E, Bettucci L, Lupo S. Botryosphaeriaceae species associated with wood diseases of stone and pome fruits trees: symptoms and virulence across different hosts in Uruguay. European journal of plant pathology. 2016;146(3):519–530. 10.1007/s10658-016-0936-4. DOI
Cloete M, Fourie PH, Damm U, Crous PW, Mostert L. Fungi associated with dieback symptoms of apple and pear trees, a possible inoculum source of grapevine trunk disease pathogens. Phytopathologia Mediterranea. 2011;50:176–190. 10.14601/Phytopathol_Mediterr-9004. DOI
Damm U, Crous PW, Fourie PH. Botryosphaeriaceae as potential pathogens of Prunus species in South Africa, with descriptions of Diplodia africana and Lasiodiplodia plurivora sp. nov. Mycologia. 2007;99(5):664–680. 10.3852/mycologia.99.5.664 PubMed DOI
Laundon G. Botryosphaeria obtusa, B. stevensii, and Otthia spiraeae in New Zealand. Transactions of the British Mycological Society. 1973;61(2):369–IN17. 10.1016/S0007-1536(73)80158-5. DOI
Larignon P. Maladies cryptogamiques du bois de la vigne: symptomatologie et agents pathogènes. Institut Français de la Vigne et du Vin, Grau du Roi dans le Gard. 2012
Luque J, Martos S, Aroca A, Raposo R, Garcia-Figueres F. Symptoms and fungi associated with declining mature grapevine plants in northeast Spain. Journal of Plant Pathology. 2009:381–390.
Morales A, Latorre BA, Piontelli E, Besoain X. Botryosphaeriaceae species affecting table grape vineyards in Chile and cultivar susceptibility. Ciencia e investigación agraria. 2012;39(3):445–458. 10.4067/S0718-16202012000300005. DOI