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Autor
Balak, Deepak M W 1 Blau, Helen M 1 Bolcková, Tereza 1 Carthel, Craig 1 Coraluppi, Stefano 1 Dzyubachyk, Oleh 1 Ederra, Cristina 1 España, Tomás 1 Hagen, Guy M 1 Harder, Nathalie 1 Jaldén, Joakim 1 Jimenez-Carretero, Daniel 1 Karas, Pavel 1 Kozubek, Michal 1 Křížek, Pavel 1 Ledesma-Carbayo, Maria J 1 Magnusson, Klas E G 1 Matula, Pavel 1 Matula, Petr 1 Maška, Martin 1
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Pracoviště
Baxter Laboratory for Stem Cell Biolo... 1 Biomedical Computer Vision Group Depa... 1 Biomedical Image Technologies Univers... 1 Biomedical Imaging Group Rotterdam Er... 1 Cancer Imaging Laboratory Oncology Di... 1 Center for Biomedical Image Analysis ... 1 Center for Biomedical Image Analysis ... 1 Center for Biomedical Image Analysis ... 1 Division of Image Processing Leiden U... 1 Fusion Technology and Systems Departm... 1 Institute of Cellular Biology and Pat... 1 KTH Royal Institute of Technology ACC... 1
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Autor
Balak, Deepak M W 1 Blau, Helen M 1 Bolcková, Tereza 1 Carthel, Craig 1 Coraluppi, Stefano 1 Dzyubachyk, Oleh 1 Ederra, Cristina 1 España, Tomás 1 Hagen, Guy M 1 Harder, Nathalie 1 Jaldén, Joakim 1 Jimenez-Carretero, Daniel 1 Karas, Pavel 1 Kozubek, Michal 1 Křížek, Pavel 1 Ledesma-Carbayo, Maria J 1 Magnusson, Klas E G 1 Matula, Pavel 1 Matula, Petr 1 Maška, Martin 1
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Pracoviště
Baxter Laboratory for Stem Cell Biolo... 1 Biomedical Computer Vision Group Depa... 1 Biomedical Image Technologies Univers... 1 Biomedical Imaging Group Rotterdam Er... 1 Cancer Imaging Laboratory Oncology Di... 1 Center for Biomedical Image Analysis ... 1 Center for Biomedical Image Analysis ... 1 Center for Biomedical Image Analysis ... 1 Division of Image Processing Leiden U... 1 Fusion Technology and Systems Departm... 1 Institute of Cellular Biology and Pat... 1 KTH Royal Institute of Technology ACC... 1
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PubMed Central od 2007
Open Access Digital Library od 1996-01-01
Medline Complete (EBSCOhost) od 1998-01-01
Oxford Journals Open Access Collection od 1985-01-01 do 2022-09-30
Oxford Journals Open Access Collection od 1985-01-01
ROAD: Directory of Open Access Scholarly Resources od 1998
PubMed
24526711
DOI
10.1093/bioinformatics/btu080
Knihovny.cz E-zdroje
MOTIVATION: Automatic tracking of cells in multidimensional time-lapse fluorescence microscopy is an important task in many biomedical applications. A novel framework for objective evaluation of cell tracking algorithms has been established under the auspices of the IEEE International Symposium on Biomedical Imaging 2013 Cell Tracking Challenge. In this article, we present the logistics, datasets, methods and results of the challenge and lay down the principles for future uses of this benchmark. RESULTS: The main contributions of the challenge include the creation of a comprehensive video dataset repository and the definition of objective measures for comparison and ranking of the algorithms. With this benchmark, six algorithms covering a variety of segmentation and tracking paradigms have been compared and ranked based on their performance on both synthetic and real datasets. Given the diversity of the datasets, we do not declare a single winner of the challenge. Instead, we present and discuss the results for each individual dataset separately. AVAILABILITY AND IMPLEMENTATION: The challenge Web site (http://www.codesolorzano.com/celltrackingchallenge) provides access to the training and competition datasets, along with the ground truth of the training videos. It also provides access to Windows and Linux executable files of the evaluation software and most of the algorithms that competed in the challenge.
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