-
Something wrong with this record ?
Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens
A. Nemec, L. Krizova, M. Maixnerova, O. Sedo, S. Brisse, PG. Higgins,
Language English Country England, Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
NLK
Free Medical Journals
from 1951 to 2 years ago
Freely Accessible Science Journals
from 2000 to 1 year ago
PubMed
25563912
DOI
10.1099/ijs.0.000043
Knihovny.cz E-resources
- MeSH
- Acinetobacter classification genetics isolation & purification MeSH
- Genes, Bacterial MeSH
- DNA, Bacterial genetics MeSH
- Phylogeny * MeSH
- Genotype MeSH
- Acinetobacter Infections microbiology MeSH
- Humans MeSH
- Molecular Sequence Data MeSH
- Multilocus Sequence Typing MeSH
- RNA, Ribosomal, 16S genetics MeSH
- Sequence Analysis, DNA MeSH
- Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization MeSH
- Bacterial Typing Techniques MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
This study aimed to define the taxonomic status of a phenetically distinct group of 16 strains that corresponds to Acinetobacter genomic species 'close to 13TU', a provisional genomic species of the Acinetobacter calcoaceticus-Acinetobacter baumannii (ACB) complex recognized by Gerner-Smidt and Tjernberg in 1993. These strains have been isolated in different countries since the early 1990s and were mostly recovered from human clinical specimens. They were compared with 45 reference strains representing the known taxa of the ACB complex using taxonomic methods relevant to the genus Acinetobacter. Based on sequence analysis of the concatenated partial sequences (2976 bp) of seven housekeeping genes, the 16 strains formed a tight and well-supported cluster (intracluster sequence identity of ≥98.4 %) that was clearly separated from the other members of the ACB complex (≤94.7 %). The species status of the group was supported by average nucleotide identity values of ≤91.7 % between the whole genome sequence of representative strain NIPH 973(T) (NCBI accession no. APOO00000000) and those of the other species. In addition, whole-cell matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) MS analyses indicated the distinctness of the group at the protein level. Metabolic and physiological tests revealed several typical features of the group, although they did not allow its reliable differentiation from the other members of the ACB complex. We conclude that the 16 strains represent a distinct novel species, for which we propose the name Acinetobacter seifertii sp. nov. The type strain is NIPH 973(T) ( = CIP 110471(T) = CCUG 34785(T) = CCM 8535(T)).
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc15022878
- 003
- CZ-PrNML
- 005
- 20170719140825.0
- 007
- ta
- 008
- 150709s2015 enk f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1099/ijs.0.000043 $2 doi
- 035 __
- $a (PubMed)25563912
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a enk
- 100 1_
- $a Nemec, Alexandr $u Laboratory of Bacterial Genetics, National Institute of Public Health, Šrobárova 48, 100 42 Prague, Czech Republic anemec@szu.cz.
- 245 10
- $a Acinetobacter seifertii sp. nov., a member of the Acinetobacter calcoaceticus-Acinetobacter baumannii complex isolated from human clinical specimens / $c A. Nemec, L. Krizova, M. Maixnerova, O. Sedo, S. Brisse, PG. Higgins,
- 520 9_
- $a This study aimed to define the taxonomic status of a phenetically distinct group of 16 strains that corresponds to Acinetobacter genomic species 'close to 13TU', a provisional genomic species of the Acinetobacter calcoaceticus-Acinetobacter baumannii (ACB) complex recognized by Gerner-Smidt and Tjernberg in 1993. These strains have been isolated in different countries since the early 1990s and were mostly recovered from human clinical specimens. They were compared with 45 reference strains representing the known taxa of the ACB complex using taxonomic methods relevant to the genus Acinetobacter. Based on sequence analysis of the concatenated partial sequences (2976 bp) of seven housekeeping genes, the 16 strains formed a tight and well-supported cluster (intracluster sequence identity of ≥98.4 %) that was clearly separated from the other members of the ACB complex (≤94.7 %). The species status of the group was supported by average nucleotide identity values of ≤91.7 % between the whole genome sequence of representative strain NIPH 973(T) (NCBI accession no. APOO00000000) and those of the other species. In addition, whole-cell matrix-assisted laser desorption ionization-time-of-flight (MALDI-TOF) MS analyses indicated the distinctness of the group at the protein level. Metabolic and physiological tests revealed several typical features of the group, although they did not allow its reliable differentiation from the other members of the ACB complex. We conclude that the 16 strains represent a distinct novel species, for which we propose the name Acinetobacter seifertii sp. nov. The type strain is NIPH 973(T) ( = CIP 110471(T) = CCUG 34785(T) = CCM 8535(T)).
- 650 _2
- $a Acinetobacter $x klasifikace $x genetika $x izolace a purifikace $7 D000150
- 650 _2
- $a infekce bakteriemi rodu Acinetobacter $x mikrobiologie $7 D000151
- 650 _2
- $a techniky typizace bakterií $7 D015373
- 650 _2
- $a DNA bakterií $x genetika $7 D004269
- 650 _2
- $a bakteriální geny $7 D005798
- 650 _2
- $a genotyp $7 D005838
- 650 _2
- $a lidé $7 D006801
- 650 _2
- $a molekulární sekvence - údaje $7 D008969
- 650 _2
- $a multilokusová sekvenční typizace $7 D058885
- 650 12
- $a fylogeneze $7 D010802
- 650 _2
- $a RNA ribozomální 16S $x genetika $7 D012336
- 650 _2
- $a sekvenční analýza DNA $7 D017422
- 650 _2
- $a spektrometrie hmotnostní - ionizace laserem za účasti matrice $7 D019032
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Krizova, Lenka $u Laboratory of Bacterial Genetics, National Institute of Public Health, Šrobárova 48, 100 42 Prague, Czech Republic.
- 700 1_
- $a Maixnerová, Martina $7 xx0093284 $u Laboratory of Bacterial Genetics, National Institute of Public Health, Šrobárova 48, 100 42 Prague, Czech Republic.
- 700 1_
- $a Sedo, Ondrej $u Research Group Proteomics, Central European Institute of Technology and National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic.
- 700 1_
- $a Brisse, Sylvain $u Institut Pasteur, Microbial Evolutionary Genomics, 28 rue du Dr Roux, F-75724 Paris, France CNRS, UMR 3525, Paris, France.
- 700 1_
- $a Higgins, Paul G $u Institute for Medical Microbiology, Immunology, and Hygiene, University of Cologne, Goldenfelsstr. 19-21, D-50935 Cologne, Germany.
- 773 0_
- $w MED00006002 $t International journal of systematic and evolutionary microbiology $x 1466-5034 $g Roč. 65, č. Pt 3 (2015), s. 934-42
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/25563912 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20150709 $b ABA008
- 991 __
- $a 20170719141317 $b ABA008
- 999 __
- $a ok $b bmc $g 1083217 $s 905871
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2015 $b 65 $c Pt 3 $d 934-42 $i 1466-5034 $m International journal of systematic and evolutionary microbiology $n Int. j. syst. evol. microbiol. (Print) $x MED00006002
- LZP __
- $a Pubmed-20150709