-
Je něco špatně v tomto záznamu ?
Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems
A. Mathis, J. Depaquit, V. Dvořák, H. Tuten, AL. Bañuls, P. Halada, S. Zapata, V. Lehrter, K. Hlavačková, J. Prudhomme, P. Volf, D. Sereno, C. Kaufmann, V. Pflüger, F. Schaffner,
Jazyk angličtina Země Anglie, Velká Británie
Typ dokumentu časopisecké články, práce podpořená grantem, validační studie
NLK
BioMedCentral
od 2008-12-01
BioMedCentral Open Access
od 2008
Directory of Open Access Journals
od 2008
Free Medical Journals
od 2008
PubMed Central
od 2008
Europe PubMed Central
od 2008
ProQuest Central
od 2009-01-01
Open Access Digital Library
od 2008-01-01
Open Access Digital Library
od 2008-01-01
Medline Complete (EBSCOhost)
od 2009-01-01
Health & Medicine (ProQuest)
od 2009-01-01
ROAD: Directory of Open Access Scholarly Resources
od 2008
Springer Nature OA/Free Journals
od 2008-12-01
- MeSH
- entomologie metody MeSH
- hmyzí proteiny analýza MeSH
- molekulární sekvence - údaje MeSH
- Psychodidae chemie klasifikace MeSH
- respirační komplex IV genetika MeSH
- sekvenční analýza DNA MeSH
- senzitivita a specificita MeSH
- spektrometrie hmotnostní - ionizace laserem za účasti matrice metody MeSH
- teplota MeSH
- zvířata MeSH
- Check Tag
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- validační studie MeSH
BACKGROUND: Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrometry fulfils these requirements for identification, and reference databases have recently been established for several vector taxa, mostly with specimens from laboratory colonies. METHODS: We established and validated a reference database containing 20 phlebotomine sand fly (Diptera: Psychodidae, Phlebotominae) species by using specimens from colonies or field-collections that had been stored for various periods of time. RESULTS: Identical biomarker mass patterns ('superspectra') were obtained with colony- or field-derived specimens of the same species. In the validation study, high quality spectra (i.e. more than 30 evaluable masses) were obtained with all fresh insects from colonies, and with 55/59 insects deep-frozen (liquid nitrogen/-80 °C) for up to 25 years. In contrast, only 36/52 specimens stored in ethanol could be identified. This resulted in an overall sensitivity of 87 % (140/161); specificity was 100 %. Duration of storage impaired data counts in the high mass range, and thus cluster analyses of closely related specimens might reflect their storage conditions rather than phenotypic distinctness. A major drawback of MALDI-TOF MS is the restricted availability of in-house databases and the fact that mass spectrometers from 2 companies (Bruker, Shimadzu) are widely being used. We have analysed fingerprints of phlebotomine sand flies obtained by automatic routine procedure on a Bruker instrument by using our database and the software established on a Shimadzu system. The sensitivity with 312 specimens from 8 sand fly species from laboratory colonies when evaluating only high quality spectra was 98.3 %; the specificity was 100 %. The corresponding diagnostic values with 55 field-collected specimens from 4 species were 94.7 % and 97.4 %, respectively. CONCLUSIONS: A centralized high-quality database (created by expert taxonomists and experienced users of mass spectrometers) that is easily amenable to customer-oriented identification services is a highly desirable resource. As shown in the present work, spectra obtained from different specimens with different instruments can be analysed using a centralized database, which should be available in the near future via an online platform in a cost-efficient manner.
Instituto de Microbiología Universidad San Francisco de Quito Diego de Robles S N Quito Ecuador
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc16010217
- 003
- CZ-PrNML
- 005
- 20160408124120.0
- 007
- ta
- 008
- 160408s2015 enk f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1186/s13071-015-0878-2 $2 doi
- 024 7_
- $a 10.1186/s13071-015-0878-2 $2 doi
- 035 __
- $a (PubMed)25957576
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a enk
- 100 1_
- $a Mathis, Alexander $u Swiss National Centre for Vector Entomology, Institute of Parasitology, University of Zürich, Winterthurerstrasse 266a, 8057, Zürich, Switzerland. alexander.mathis@uzh.ch.
- 245 10
- $a Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems / $c A. Mathis, J. Depaquit, V. Dvořák, H. Tuten, AL. Bañuls, P. Halada, S. Zapata, V. Lehrter, K. Hlavačková, J. Prudhomme, P. Volf, D. Sereno, C. Kaufmann, V. Pflüger, F. Schaffner,
- 520 9_
- $a BACKGROUND: Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrometry fulfils these requirements for identification, and reference databases have recently been established for several vector taxa, mostly with specimens from laboratory colonies. METHODS: We established and validated a reference database containing 20 phlebotomine sand fly (Diptera: Psychodidae, Phlebotominae) species by using specimens from colonies or field-collections that had been stored for various periods of time. RESULTS: Identical biomarker mass patterns ('superspectra') were obtained with colony- or field-derived specimens of the same species. In the validation study, high quality spectra (i.e. more than 30 evaluable masses) were obtained with all fresh insects from colonies, and with 55/59 insects deep-frozen (liquid nitrogen/-80 °C) for up to 25 years. In contrast, only 36/52 specimens stored in ethanol could be identified. This resulted in an overall sensitivity of 87 % (140/161); specificity was 100 %. Duration of storage impaired data counts in the high mass range, and thus cluster analyses of closely related specimens might reflect their storage conditions rather than phenotypic distinctness. A major drawback of MALDI-TOF MS is the restricted availability of in-house databases and the fact that mass spectrometers from 2 companies (Bruker, Shimadzu) are widely being used. We have analysed fingerprints of phlebotomine sand flies obtained by automatic routine procedure on a Bruker instrument by using our database and the software established on a Shimadzu system. The sensitivity with 312 specimens from 8 sand fly species from laboratory colonies when evaluating only high quality spectra was 98.3 %; the specificity was 100 %. The corresponding diagnostic values with 55 field-collected specimens from 4 species were 94.7 % and 97.4 %, respectively. CONCLUSIONS: A centralized high-quality database (created by expert taxonomists and experienced users of mass spectrometers) that is easily amenable to customer-oriented identification services is a highly desirable resource. As shown in the present work, spectra obtained from different specimens with different instruments can be analysed using a centralized database, which should be available in the near future via an online platform in a cost-efficient manner.
- 650 _2
- $a zvířata $7 D000818
- 650 _2
- $a respirační komplex IV $x genetika $7 D003576
- 650 _2
- $a entomologie $x metody $7 D004772
- 650 _2
- $a hmyzí proteiny $x analýza $7 D019476
- 650 _2
- $a molekulární sekvence - údaje $7 D008969
- 650 _2
- $a Psychodidae $x chemie $x klasifikace $7 D011576
- 650 _2
- $a senzitivita a specificita $7 D012680
- 650 _2
- $a sekvenční analýza DNA $7 D017422
- 650 _2
- $a spektrometrie hmotnostní - ionizace laserem za účasti matrice $x metody $7 D019032
- 650 _2
- $a teplota $7 D013696
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 655 _2
- $a validační studie $7 D023361
- 700 1_
- $a Depaquit, Jérôme $u Université de Reims Champagne-Ardenne, ANSES, EA4688 - USC "transmission vectorielle et épidémiosurveillance de maladies parasitaires (VECPAR)", SFR Cap Santé, 51, rue Cognacq-Jay, 51096, Reims, France. jerome.depaquit@univ-reims.fr.
- 700 1_
- $a Dvořák, Vit $u Department of Parasitology, Faculty of Sciences, Charles University in Prague, Vinicna 7, 128 44, Prague 2, Czech Republic. icejumper@seznam.cz.
- 700 1_
- $a Tuten, Holly $u Swiss National Centre for Vector Entomology, Institute of Parasitology, University of Zürich, Winterthurerstrasse 266a, 8057, Zürich, Switzerland. htuten@gmail.com. Current address: NSF Center for Integrated Pest Management, 1730 Varsity Drive, Suite 110, Venture IV Building, Raleigh, North Carolina, 27606, USA. htuten@gmail.com.
- 700 1_
- $a Bañuls, Anne-Laure $u MIVEGEC, UMR CNRS-IRD-Université de Montpellier Centre IRD, 911 Avenue Agropolis, BP 64501, , Cedex 34394, Montpellier, France. anne-laure.banuls@ird.fr.
- 700 1_
- $a Halada, Petr $u Laboratory of Molecular Structure Characterization, Institute of Microbiology, The Czech Academy of Sciences, Videnska 1083, 142 20, Prague 4, Czech Republic. halada@biomed.cas.cz.
- 700 1_
- $a Zapata, Sonia $u Instituto de Microbiología, Universidad San Francisco de Quito, Diego de Robles S/N, Quito, Ecuador. szapata@usfq.edu.ec.
- 700 1_
- $a Lehrter, Véronique $u Université de Reims Champagne-Ardenne, ANSES, EA4688 - USC "transmission vectorielle et épidémiosurveillance de maladies parasitaires (VECPAR)", SFR Cap Santé, 51, rue Cognacq-Jay, 51096, Reims, France. veronique.lehrter@univ-reims.fr.
- 700 1_
- $a Hlavačková, Kristýna $u Department of Parasitology, Faculty of Sciences, Charles University in Prague, Vinicna 7, 128 44, Prague 2, Czech Republic. hlavackova.k@centrum.cz.
- 700 1_
- $a Prudhomme, Jorian $u MIVEGEC, UMR CNRS-IRD-Université de Montpellier Centre IRD, 911 Avenue Agropolis, BP 64501, , Cedex 34394, Montpellier, France. Jorian.Prudhomme@hotmail.fr.
- 700 1_
- $a Volf, Petr $u Department of Parasitology, Faculty of Sciences, Charles University in Prague, Vinicna 7, 128 44, Prague 2, Czech Republic. volf@cesnet.cz.
- 700 1_
- $a Sereno, Denis $u MIVEGEC, UMR CNRS-IRD-Université de Montpellier Centre IRD, 911 Avenue Agropolis, BP 64501, , Cedex 34394, Montpellier, France. denis.sereno@ird.fr.
- 700 1_
- $a Kaufmann, Christian $u Swiss National Centre for Vector Entomology, Institute of Parasitology, University of Zürich, Winterthurerstrasse 266a, 8057, Zürich, Switzerland. anopheles@swissonline.ch.
- 700 1_
- $a Pflüger, Valentin $u Mabritec SA, Lörracherstrasse 50, 4125, Riehen, Switzerland. Valentin.Pflueger@mabritec.com.
- 700 1_
- $a Schaffner, Francis $u Swiss National Centre for Vector Entomology, Institute of Parasitology, University of Zürich, Winterthurerstrasse 266a, 8057, Zürich, Switzerland. francis.schaffner@uzh.ch. Avia-GIS, Risschotlei 33, 2980, Zoersel, Belgium. francis.schaffner@uzh.ch.
- 773 0_
- $w MED00165371 $t Parasites & vectors $x 1756-3305 $g Roč. 8, č. - (2015), s. 266
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/25957576 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20160408 $b ABA008
- 991 __
- $a 20160408124158 $b ABA008
- 999 __
- $a ok $b bmc $g 1113646 $s 934585
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2015 $b 8 $c - $d 266 $e 20150510 $i 1756-3305 $m Parasites & vectors $n Parasit Vectors $x MED00165371
- LZP __
- $a Pubmed-20160408