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Four simple recommendations to encourage best practices in research software

RC. Jiménez, M. Kuzak, M. Alhamdoosh, M. Barker, B. Batut, M. Borg, S. Capella-Gutierrez, N. Chue Hong, M. Cook, M. Corpas, M. Flannery, L. Garcia, JL. Gelpí, S. Gladman, C. Goble, M. González Ferreiro, A. Gonzalez-Beltran, PC. Griffin, B....

. 2017 ; 6 (-) : . [pub] 20170613

Jazyk angličtina Země Anglie, Velká Británie

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/bmc17032040

Scientific research relies on computer software, yet software is not always developed following practices that ensure its quality and sustainability. This manuscript does not aim to propose new software development best practices, but rather to provide simple recommendations that encourage the adoption of existing best practices. Software development best practices promote better quality software, and better quality software improves the reproducibility and reusability of research. These recommendations are designed around Open Source values, and provide practical suggestions that contribute to making research software and its source code more discoverable, reusable and transparent. This manuscript is aimed at developers, but also at organisations, projects, journals and funders that can increase the quality and sustainability of research software by encouraging the adoption of these recommendations.

Australian National Data Service Melbourne Australia

Barcelona Supercomputing Center Barcelona 08034 Spain Department of Biochemistry and Molecular Biomedicine Universitat de Barcelona Barcelona 08028 Spain

BBMRI at Alpen Adria University Klagenfurt Klagenfurt Austria

BBMRI ERIC Neue Stiftingtalstraße 2 B 6 Graz 8010 Austria

Center for Open Science Charlottesville VA USA

Central European Institute of Technology Brno Czech Republic National Centre for Biomolecular Research Masaryk University Brno Czech Republic

Centre for Language and Speech Technology Radboud University Nijmegen Nijmegen Netherlands

Computational Biology Division Department of Integrative Biomedical Sciences Institute for Infectious Disease and Molecular Medicine University of Cape Town Cape Town South Africa

CSL Limited Bio21 Institute 30 Flemington Road Parkville Victoria 3010 Australia

DETI IEETA University of Aveiro Aveiro Portugal

Dutch TechCenter for Life Sciences and ELIXIR NL Utrecht Netherlands

ELIXIR CZ Faculty of Information Technology Czech Technical University Prague Prague Czech Republic

ELIXIR DE and de NBI Bioinformatics Group Department of Computer Science University of Freiburg Freiburg Germany

ELIXIR DK Technical University of Denmark Denmark Denmark

ELIXIR EE Institute of Computer Science University of Tartu Tartu Estonia

ELIXIR ES Spanish National Bioinformatics Institute Calle de Melchor Fernández Almagro 3 Madrid 28029 Spain

ELIXIR Hub Wellcome Genome Campus Hinxton CB10 1SD UK

ELIXIR SE National Bioinformatics Infrastructure Sweden Stockholm University Stockholm Sweden

ELIXIR SI Faculty of Medicine University of Ljubljana Ljubljana Slovenia

ELIXIR UK Software Sustainability Institute School of Computer Science University of Manchester Oxford Road Manchester M13 9PL UK

EMBL Australia Bioinformatics Resource Lab 14 The University of Melbourne 700 Swanston St Parkville Victoria 3053 Australia

EMBL Australia Bioinformatics Resource Lab 14 The University of Melbourne 700 Swanston St Parkville Victoria 3053 Australia Australian Genome Research Facility Ltd Melbourne Australia

EMBL EBI Wellcome Genome Campus Hinxton CB10 1SD UK

Faculty of Information Technology Monash University Victoria Australia

GRIB Institut Hospital del Mar d'Investigacions Mèdiques Universitat Pompeu Fabra Barcelona Spain

IBPM CNR Department of Biochemical Sciences Sapienza University of Rome Rome Italy

National Center for Supercomputing Applications University of Illinois at Urbana Champaign Urbana IL USA School of Information Sciences University of Illinois Urbana Champaign Urbana IL USA Department of Electrical and Computer Engineering University of Illinois Urbana Champaign Urbana IL USA Department of Computer Science University of Illinois Urbana Champaign Urbana IL USA

National eResearch Collaboration Tools and Resources Victoria 3010 Australia

Netherlands eScience Center Science Park 140 Amsterdam 1098 XG Netherlands

Oxford e Research Centre University of Oxford Oxford UK

Repositive Ltd Future Business Centre Cambridge UK

School of Agriculture Food and Wine University of Adelaide Adelaide Australia

School of Information Sciences University of Illinois Urbana Champaign Urbana IL USA

Science and Technologies Facilities Council Swindon UK

Software Sustainability Institute JCMB University of Edinburgh Edinburgh EH9 3FD UK

Software Sustainability Institute Web and Internet Science University of Southampton Southampton UK

Stemformatics University of Melbourne Melbourne Australia

Citace poskytuje Crossref.org

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