-
Je něco špatně v tomto záznamu ?
Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic
D. Šafářová, T. Candresse, M. Navrátil,
Jazyk angličtina Země Rakousko
Typ dokumentu časopisecké články
NLK
ProQuest Central
od 2002-01-01 do Před 1 rokem
Medline Complete (EBSCOhost)
od 2000-01-01 do Před 1 rokem
Health & Medicine (ProQuest)
od 2002-01-01 do Před 1 rokem
Public Health Database (ProQuest)
od 2002-01-01 do Před 1 rokem
- MeSH
- bez černý virologie MeSH
- Bromovirus klasifikace genetika izolace a purifikace MeSH
- fylogeneze MeSH
- genom virový * MeSH
- molekulární sekvence - údaje MeSH
- nemoci rostlin virologie MeSH
- otevřené čtecí rámce MeSH
- RNA virová genetika MeSH
- sekvence nukleotidů MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Česká republika MeSH
The genus Bromovirus currently contains six species whose members have relatively narrow host ranges. In the present work, a new bromovirus infecting elderberry (Sambucus nigra L.) is reported. dsRNA was purified and sequenced by next-generation sequencing, and with minimal additional completion by Sanger sequencing, the full tripartite genome was obtained. RNA1 is 3241 nt long and contains ORF1 (1a protein), RNA2 is 2810 nt long and contains ORF2 (2a protein), and RNA3 is 2244 nt long and contains ORF3a (movement protein) and ORF3b (coat protein, CP), separated by an intercistronic poly(A) stretch. Proteins 1a and 2a showed highest sequence identity (69.9% and 69.4%) to the corresponding proteins of melandrium yellow fleck virus. The coat protein showed highest sequence identity (67.9%) to that of brome mosaic virus. The genome shows a typical bromovirus organisation comprising of all the conserved protein domains within the genus. Phylogenetic analysis supports the assignment of this virus as a new member of the genus Bromovirus, for which the name "sambucus virus S" (SVS) is proposed.
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc18010285
- 003
- CZ-PrNML
- 005
- 20180417140814.0
- 007
- ta
- 008
- 180404s2018 au f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1007/s00705-017-3629-1 $2 doi
- 035 __
- $a (PubMed)29094240
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a au
- 100 1_
- $a Šafářová, Dana $u Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71, Olomouc-Holice, Czech Republic. dana.safarova@upol.cz.
- 245 10
- $a Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic / $c D. Šafářová, T. Candresse, M. Navrátil,
- 520 9_
- $a The genus Bromovirus currently contains six species whose members have relatively narrow host ranges. In the present work, a new bromovirus infecting elderberry (Sambucus nigra L.) is reported. dsRNA was purified and sequenced by next-generation sequencing, and with minimal additional completion by Sanger sequencing, the full tripartite genome was obtained. RNA1 is 3241 nt long and contains ORF1 (1a protein), RNA2 is 2810 nt long and contains ORF2 (2a protein), and RNA3 is 2244 nt long and contains ORF3a (movement protein) and ORF3b (coat protein, CP), separated by an intercistronic poly(A) stretch. Proteins 1a and 2a showed highest sequence identity (69.9% and 69.4%) to the corresponding proteins of melandrium yellow fleck virus. The coat protein showed highest sequence identity (67.9%) to that of brome mosaic virus. The genome shows a typical bromovirus organisation comprising of all the conserved protein domains within the genus. Phylogenetic analysis supports the assignment of this virus as a new member of the genus Bromovirus, for which the name "sambucus virus S" (SVS) is proposed.
- 650 _2
- $a sekvence nukleotidů $7 D001483
- 650 _2
- $a Bromovirus $x klasifikace $x genetika $x izolace a purifikace $7 D017795
- 650 _2
- $a Česká republika $7 D018153
- 650 12
- $a genom virový $7 D016679
- 650 _2
- $a molekulární sekvence - údaje $7 D008969
- 650 _2
- $a otevřené čtecí rámce $7 D016366
- 650 _2
- $a fylogeneze $7 D010802
- 650 _2
- $a nemoci rostlin $x virologie $7 D010935
- 650 _2
- $a RNA virová $x genetika $7 D012367
- 650 _2
- $a bez černý $x virologie $7 D027924
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a Candresse, Thierry $u UMR 1332 Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS20032, 33882, Villenave d'Ornon Cedex, France.
- 700 1_
- $a Navrátil, Milan $u Department of Cell Biology and Genetics, Faculty of Science, Palacký University, Šlechtitelů 27, 783 71, Olomouc-Holice, Czech Republic.
- 773 0_
- $w MED00009266 $t Archives of virology $x 1432-8798 $g Roč. 163, č. 2 (2018), s. 567-570
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/29094240 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20180404 $b ABA008
- 991 __
- $a 20180417140913 $b ABA008
- 999 __
- $a ok $b bmc $g 1287770 $s 1007097
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2018 $b 163 $c 2 $d 567-570 $e 20171101 $i 1432-8798 $m Archives of virology $n Arch Virol $x MED00009266
- LZP __
- $a Pubmed-20180404