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A model of optimal protein allocation during phototrophic growth

M. Faizi, T. Zavřel, C. Loureiro, J. Červený, R. Steuer,

. 2018 ; 166 (-) : 26-36. [pub] 20180221

Jazyk angličtina Země Irsko

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/bmc18033287

Photoautotrophic growth depends upon an optimal allocation of finite cellular resources to diverse intracellular processes. Commitment of a certain mass fraction of the proteome to a specific cellular function typically reduces the proteome available for other cellular functions. Here, we develop a semi-quantitative kinetic model of cyanobacterial phototrophic growth to describe such trade-offs of cellular protein allocation. The model is based on coarse-grained descriptions of key cellular processes, in particular carbon uptake, metabolism, photosynthesis, and protein translation. The model is parameterized using literature data and experimentally obtained growth curves. Of particular interest are the resulting cyanobacterial growth laws as fundamental characteristics of cellular growth. We show that the model gives rise to similar growth laws as observed for heterotrophic organisms, with several important differences due to the distinction between light energy and carbon uptake. We discuss recent experimental data supporting the model results and show that coarse-grained growth models have implications for our understanding of the limits of phototrophic growth and bridge a gap between molecular physiology and ecology.

Citace poskytuje Crossref.org

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$a A model of optimal protein allocation during phototrophic growth / $c M. Faizi, T. Zavřel, C. Loureiro, J. Červený, R. Steuer,
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$a Photoautotrophic growth depends upon an optimal allocation of finite cellular resources to diverse intracellular processes. Commitment of a certain mass fraction of the proteome to a specific cellular function typically reduces the proteome available for other cellular functions. Here, we develop a semi-quantitative kinetic model of cyanobacterial phototrophic growth to describe such trade-offs of cellular protein allocation. The model is based on coarse-grained descriptions of key cellular processes, in particular carbon uptake, metabolism, photosynthesis, and protein translation. The model is parameterized using literature data and experimentally obtained growth curves. Of particular interest are the resulting cyanobacterial growth laws as fundamental characteristics of cellular growth. We show that the model gives rise to similar growth laws as observed for heterotrophic organisms, with several important differences due to the distinction between light energy and carbon uptake. We discuss recent experimental data supporting the model results and show that coarse-grained growth models have implications for our understanding of the limits of phototrophic growth and bridge a gap between molecular physiology and ecology.
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$a Zavřel, Tomáš $u Department of Adaptive Biotechnologies, Global Change Research Institute CAS, Brno,Czech Republic.
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$a Loureiro, Cristina $u Department of Applied Physics, Polytechnic University of Valencia, Valencia, Spain.
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$a Červený, Jan $u Department of Adaptive Biotechnologies, Global Change Research Institute CAS, Brno,Czech Republic.
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$a Steuer, Ralf $u Humboldt-Universität zu Berlin, Institut für Biologie, Fachinstitut für Theoretische Biologie (ITB), 10115 Berlin, Germany. Electronic address: ralf.steuer@hu-berlin.de.
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