-
Je něco špatně v tomto záznamu ?
General and Modular Strategy for Designing Potent, Selective, and Pharmacologically Compliant Inhibitors of Rhomboid Proteases
A. Tichá, S. Stanchev, KR. Vinothkumar, DC. Mikles, P. Pachl, J. Began, J. Škerle, K. Švehlová, MTN. Nguyen, SHL. Verhelst, DC. Johnson, DA. Bachovchin, M. Lepšík, P. Majer, K. Strisovsky,
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem
NLK
Cell Press Free Archives
od 2016-01-21 do Před 1 rokem
Elsevier Open Access Journals
od 2016-01-21 do 2023-06-15
Elsevier Open Archive Journals
od 2016-01-21 do Před 1 rokem
- MeSH
- gramnegativní bakterie enzymologie MeSH
- grampozitivní bakterie enzymologie MeSH
- inhibitory serinových proteinas chemická syntéza chemie farmakologie MeSH
- molekulární konformace MeSH
- molekulární modely MeSH
- proteasy metabolismus MeSH
- racionální návrh léčiv * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
Rhomboid-family intramembrane proteases regulate important biological processes and have been associated with malaria, cancer, and Parkinson's disease. However, due to the lack of potent, selective, and pharmacologically compliant inhibitors, the wide therapeutic potential of rhomboids is currently untapped. Here, we bridge this gap by discovering that peptidyl α-ketoamides substituted at the ketoamide nitrogen by hydrophobic groups are potent rhomboid inhibitors active in the nanomolar range, surpassing the currently used rhomboid inhibitors by up to three orders of magnitude. Such peptidyl ketoamides show selectivity for rhomboids, leaving most human serine hydrolases unaffected. Crystal structures show that these compounds bind the active site of rhomboid covalently and in a substrate-like manner, and kinetic analysis reveals their reversible, slow-binding, non-competitive mechanism. Since ketoamides are clinically used pharmacophores, our findings uncover a straightforward modular way for the design of specific inhibitors of rhomboid proteases, which can be widely applicable in cell biology and drug discovery.
1st Faculty of Medicine Charles University Kateřinská 32 Prague 121 08 Czech Republic
KU Leuven University of Leuven Herestraat 49 Box 802 3000 Leuven Belgium
Leibniz Institute for Analytical Sciences ISAS Otto Hahn Strasse 6b 44227 Dortmund Germany
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc19001112
- 003
- CZ-PrNML
- 005
- 20190115101247.0
- 007
- ta
- 008
- 190107s2017 xxu f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1016/j.chembiol.2017.09.007 $2 doi
- 035 __
- $a (PubMed)29107700
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xxu
- 100 1_
- $a Tichá, Anežka $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic; First Faculty of Medicine, Charles University, Kateřinská 32, Prague 121 08, Czech Republic.
- 245 10
- $a General and Modular Strategy for Designing Potent, Selective, and Pharmacologically Compliant Inhibitors of Rhomboid Proteases / $c A. Tichá, S. Stanchev, KR. Vinothkumar, DC. Mikles, P. Pachl, J. Began, J. Škerle, K. Švehlová, MTN. Nguyen, SHL. Verhelst, DC. Johnson, DA. Bachovchin, M. Lepšík, P. Majer, K. Strisovsky,
- 520 9_
- $a Rhomboid-family intramembrane proteases regulate important biological processes and have been associated with malaria, cancer, and Parkinson's disease. However, due to the lack of potent, selective, and pharmacologically compliant inhibitors, the wide therapeutic potential of rhomboids is currently untapped. Here, we bridge this gap by discovering that peptidyl α-ketoamides substituted at the ketoamide nitrogen by hydrophobic groups are potent rhomboid inhibitors active in the nanomolar range, surpassing the currently used rhomboid inhibitors by up to three orders of magnitude. Such peptidyl ketoamides show selectivity for rhomboids, leaving most human serine hydrolases unaffected. Crystal structures show that these compounds bind the active site of rhomboid covalently and in a substrate-like manner, and kinetic analysis reveals their reversible, slow-binding, non-competitive mechanism. Since ketoamides are clinically used pharmacophores, our findings uncover a straightforward modular way for the design of specific inhibitors of rhomboid proteases, which can be widely applicable in cell biology and drug discovery.
- 650 12
- $a racionální návrh léčiv $7 D015195
- 650 _2
- $a gramnegativní bakterie $x enzymologie $7 D006090
- 650 _2
- $a grampozitivní bakterie $x enzymologie $7 D006094
- 650 _2
- $a molekulární modely $7 D008958
- 650 _2
- $a molekulární konformace $7 D008968
- 650 _2
- $a proteasy $x metabolismus $7 D010447
- 650 _2
- $a inhibitory serinových proteinas $x chemická syntéza $x chemie $x farmakologie $7 D015842
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a Research Support, N.I.H., Extramural $7 D052061
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Stanchev, Stancho $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Vinothkumar, Kutti R $u Medical Research Council Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge CB2 0QH, UK.
- 700 1_
- $a Mikles, David C $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Pachl, Petr $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Began, Jakub $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic; Department of Genetics and Microbiology, Faculty of Science, Charles University, Viničná 5, Prague 128 44, Czech Republic.
- 700 1_
- $a Škerle, Jan $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic; Department of Biochemistry, Faculty of Science, Charles University, Hlavova 2030/8, Prague 128 43, Czech Republic.
- 700 1_
- $a Švehlová, Kateřina $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Nguyen, Minh T N $u Leibniz Institute for Analytical Sciences ISAS, Otto-Hahn-Strasse 6b, 44227 Dortmund, Germany.
- 700 1_
- $a Verhelst, Steven H L $u Leibniz Institute for Analytical Sciences ISAS, Otto-Hahn-Strasse 6b, 44227 Dortmund, Germany; KU Leuven - University of Leuven, Herestraat 49, Box 802, 3000 Leuven, Belgium.
- 700 1_
- $a Johnson, Darren C $u Chemical Biology Program, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, Box 428, New York, NY 10065, USA.
- 700 1_
- $a Bachovchin, Daniel A $u Chemical Biology Program, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, Box 428, New York, NY 10065, USA.
- 700 1_
- $a Lepšík, Martin $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Majer, Pavel $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic.
- 700 1_
- $a Strisovsky, Kvido $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Flemingovo n. 2, Prague 166 10, Czech Republic. Electronic address: kvido.strisovsky@uochb.cas.cz.
- 773 0_
- $w MED00195160 $t Cell chemical biology $x 2451-9448 $g Roč. 24, č. 12 (2017), s. 1523-1536.e4
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/29107700 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20190107 $b ABA008
- 991 __
- $a 20190115101457 $b ABA008
- 999 __
- $a ok $b bmc $g 1364006 $s 1039235
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2017 $b 24 $c 12 $d 1523-1536.e4 $e 20171026 $i 2451-9448 $m Cell chemical biology $n Cell Chem Biol $x MED00195160
- LZP __
- $a Pubmed-20190107