-
Something wrong with this record ?
Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5
K. Tratsiak, T. Prudnikova, I. Drienovska, J. Damborsky, J. Brynda, P. Pachl, M. Kuty, R. Chaloupkova, P. Rezacova, I. Kuta Smatanova,
Language English Country United States
Document type Journal Article
Grant support
CZ.1.05/2.1.00/01.0024
Ministerstvo Školství, Mládeže a Tělovýchovy
CZ.1.05/2.1.00/01.0001
Ministerstvo Školství, Mládeže a Tělovýchovy
CZ.02.1.01/0.0/0.0/15_003/0000441
Ministerstvo Školství, Mládeže a Tělovýchovy
17-24321S
Grantová Agentura České Republiky
NLK
Free Medical Journals
from 2014 to 2 years ago
PubMed Central
from 2014 to 1 year ago
Europe PubMed Central
from 2014 to 2 years ago
- MeSH
- Bacterial Proteins chemistry genetics metabolism MeSH
- Escherichia coli genetics metabolism MeSH
- Gene Expression MeSH
- Genetic Vectors chemistry metabolism MeSH
- Hydrocarbons, Halogenated chemistry metabolism MeSH
- Hydrolases chemistry genetics metabolism MeSH
- Protein Interaction Domains and Motifs MeSH
- Cloning, Molecular MeSH
- Protein Conformation, alpha-Helical MeSH
- Protein Conformation, beta-Strand MeSH
- Crystallography, X-Ray MeSH
- Cold Temperature MeSH
- Psychrobacter chemistry enzymology MeSH
- Recombinant Fusion Proteins chemistry genetics metabolism MeSH
- Amino Acid Sequence MeSH
- Molecular Docking Simulation MeSH
- Structural Homology, Protein MeSH
- Substrate Specificity MeSH
- Thermodynamics MeSH
- Protein Binding MeSH
- Binding Sites MeSH
- Publication type
- Journal Article MeSH
Haloalkane dehalogenases (HLDs) convert halogenated aliphatic pollutants to less toxic compounds by a hydrolytic mechanism. Owing to their broad substrate specificity and high enantioselectivity, haloalkane dehalogenases can function as biosensors to detect toxic compounds in the environment or can be used for the production of optically pure compounds. Here, the structural analysis of the haloalkane dehalogenase DpcA isolated from the psychrophilic bacterium Psychrobacter cryohalolentis K5 is presented at the atomic resolution of 1.05 Å. This enzyme exhibits a low temperature optimum, making it attractive for environmental applications such as biosensing at the subsurface environment, where the temperature typically does not exceed 25°C. The structure revealed that DpcA possesses the shortest access tunnel and one of the most widely open main tunnels among structural homologs of the HLD-I subfamily. Comparative analysis revealed major differences in the region of the α4 helix of the cap domain, which is one of the key determinants of the anatomy of the tunnels. The crystal structure of DpcA will contribute to better understanding of the structure-function relationships of cold-adapted enzymes.
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc19034598
- 003
- CZ-PrNML
- 005
- 20191010091819.0
- 007
- ta
- 008
- 191007s2019 xxu f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1107/S2053230X19002796 $2 doi
- 035 __
- $a (PubMed)31045561
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xxu
- 100 1_
- $a Tratsiak, Katsiaryna $u Faculty of Science, University of South Bohemia in Ceske Budejovice, Branisovska 1760, 370 05 Ceske Budejovice, Czech Republic.
- 245 10
- $a Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5 / $c K. Tratsiak, T. Prudnikova, I. Drienovska, J. Damborsky, J. Brynda, P. Pachl, M. Kuty, R. Chaloupkova, P. Rezacova, I. Kuta Smatanova,
- 520 9_
- $a Haloalkane dehalogenases (HLDs) convert halogenated aliphatic pollutants to less toxic compounds by a hydrolytic mechanism. Owing to their broad substrate specificity and high enantioselectivity, haloalkane dehalogenases can function as biosensors to detect toxic compounds in the environment or can be used for the production of optically pure compounds. Here, the structural analysis of the haloalkane dehalogenase DpcA isolated from the psychrophilic bacterium Psychrobacter cryohalolentis K5 is presented at the atomic resolution of 1.05 Å. This enzyme exhibits a low temperature optimum, making it attractive for environmental applications such as biosensing at the subsurface environment, where the temperature typically does not exceed 25°C. The structure revealed that DpcA possesses the shortest access tunnel and one of the most widely open main tunnels among structural homologs of the HLD-I subfamily. Comparative analysis revealed major differences in the region of the α4 helix of the cap domain, which is one of the key determinants of the anatomy of the tunnels. The crystal structure of DpcA will contribute to better understanding of the structure-function relationships of cold-adapted enzymes.
- 650 _2
- $a sekvence aminokyselin $7 D000595
- 650 _2
- $a bakteriální proteiny $x chemie $x genetika $x metabolismus $7 D001426
- 650 _2
- $a vazebná místa $7 D001665
- 650 _2
- $a klonování DNA $7 D003001
- 650 _2
- $a nízká teplota $7 D003080
- 650 _2
- $a krystalografie rentgenová $7 D018360
- 650 _2
- $a Escherichia coli $x genetika $x metabolismus $7 D004926
- 650 _2
- $a exprese genu $7 D015870
- 650 _2
- $a genetické vektory $x chemie $x metabolismus $7 D005822
- 650 _2
- $a halogenované uhlovodíky $x chemie $x metabolismus $7 D006846
- 650 _2
- $a hydrolasy $x chemie $x genetika $x metabolismus $7 D006867
- 650 _2
- $a simulace molekulového dockingu $7 D062105
- 650 _2
- $a vazba proteinů $7 D011485
- 650 _2
- $a konformace proteinů, alfa-helix $7 D000072756
- 650 _2
- $a konformace proteinů, beta-řetězec $7 D000072757
- 650 _2
- $a interakční proteinové domény a motivy $7 D054730
- 650 _2
- $a Psychrobacter $x chemie $x enzymologie $7 D044096
- 650 _2
- $a rekombinantní fúzní proteiny $x chemie $x genetika $x metabolismus $7 D011993
- 650 _2
- $a strukturní homologie proteinů $7 D040681
- 650 _2
- $a substrátová specifita $7 D013379
- 650 _2
- $a termodynamika $7 D013816
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a Prudnikova, Tatyana $u Faculty of Science, University of South Bohemia in Ceske Budejovice, Branisovska 1760, 370 05 Ceske Budejovice, Czech Republic.
- 700 1_
- $a Drienovska, Ivana $u Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno, Czech Republic.
- 700 1_
- $a Damborsky, Jiri $u Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno, Czech Republic.
- 700 1_
- $a Brynda, Jiri $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nam. 2, 166 10 Prague, Czech Republic.
- 700 1_
- $a Pachl, Petr $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nam. 2, 166 10 Prague, Czech Republic.
- 700 1_
- $a Kuty, Michal $u Faculty of Science, University of South Bohemia in Ceske Budejovice, Branisovska 1760, 370 05 Ceske Budejovice, Czech Republic.
- 700 1_
- $a Chaloupkova, Radka $u Loschmidt Laboratories, Department of Experimental Biology and RECETOX, Faculty of Science, Masaryk University, Kamenice 5/A13, 625 00 Brno, Czech Republic.
- 700 1_
- $a Rezacova, Pavlina $u Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, v.v.i., Flemingovo nam. 2, 166 10 Prague, Czech Republic.
- 700 1_
- $a Kuta Smatanova, Ivana $u Faculty of Science, University of South Bohemia in Ceske Budejovice, Branisovska 1760, 370 05 Ceske Budejovice, Czech Republic.
- 773 0_
- $w MED00189488 $t Acta crystallographica. Section F, Structural biology communications $x 2053-230X $g Roč. 75, č. Pt 5 (2019), s. 324-331
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/31045561 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20191007 $b ABA008
- 991 __
- $a 20191010092238 $b ABA008
- 999 __
- $a ok $b bmc $g 1451258 $s 1073148
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2019 $b 75 $c Pt 5 $d 324-331 $e 20190424 $i 2053-230X $m Acta crystallographica. Section F, Structural biology communications $n Acta Crystallogr F Struct Biol Commun $x MED00189488
- GRA __
- $a CZ.1.05/2.1.00/01.0024 $p Ministerstvo Školství, Mládeže a Tělovýchovy
- GRA __
- $a CZ.1.05/2.1.00/01.0001 $p Ministerstvo Školství, Mládeže a Tělovýchovy
- GRA __
- $a CZ.02.1.01/0.0/0.0/15_003/0000441 $p Ministerstvo Školství, Mládeže a Tělovýchovy
- GRA __
- $a 17-24321S $p Grantová Agentura České Republiky
- LZP __
- $a Pubmed-20191007