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Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints
A. Gomez, AK. Sharma, EK. Mallott, KJ. Petrzelkova, CA. Jost Robinson, CJ. Yeoman, F. Carbonero, B. Pafco, JM. Rothman, A. Ulanov, K. Vlckova, KR. Amato, SL. Schnorr, NJ. Dominy, D. Modry, A. Todd, M. Torralba, KE. Nelson, MB. Burns, R. Blekhman,...
Jazyk angličtina Země Spojené státy americké
Typ dokumentu srovnávací studie, časopisecké články, práce podpořená grantem
NLK
Directory of Open Access Journals
od 2016
Free Medical Journals
od 2016
Freely Accessible Science Journals
od 2016
PubMed Central
od 2016
Europe PubMed Central
od 2016
ProQuest Central
od 2015-01-01
Open Access Digital Library
od 2016-01-01
Health & Medicine (ProQuest)
od 2015-01-01
ROAD: Directory of Open Access Scholarly Resources
od 2016
PubMed
31366708
DOI
10.1128/msphere.00271-19
Knihovny.cz E-zdroje
- MeSH
- Bacteria klasifikace izolace a purifikace MeSH
- dieta * MeSH
- feces mikrobiologie MeSH
- fylogeneze MeSH
- genetická variace * MeSH
- lidé MeSH
- molekulární evoluce * MeSH
- primáti mikrobiologie MeSH
- RNA ribozomální 16S genetika MeSH
- střevní mikroflóra * MeSH
- životní styl MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- srovnávací studie MeSH
The gut microbiome of primates, including humans, is reported to closely follow host evolutionary history, with gut microbiome composition being specific to the genetic background of its primate host. However, the comparative models used to date have mainly included a limited set of closely related primates. To further understand the forces that shape the primate gut microbiome, with reference to human populations, we expanded the comparative analysis of variation among gut microbiome compositions and their primate hosts, including 9 different primate species and 4 human groups characterized by a diverse set of subsistence patterns (n = 448 samples). The results show that the taxonomic composition of the human gut microbiome, at the genus level, exhibits increased compositional plasticity. Specifically, we show unexpected similarities between African Old World monkeys that rely on eclectic foraging and human populations engaging in nonindustrial subsistence patterns; these similarities transcend host phylogenetic constraints. Thus, instead of following evolutionary trends that would make their microbiomes more similar to that of conspecifics or more phylogenetically similar apes, gut microbiome composition in humans from nonindustrial populations resembles that of generalist cercopithecine monkeys. We also document that wild cercopithecine monkeys with eclectic diets and humans following nonindustrial subsistence patterns harbor high gut microbiome diversity that is not only higher than that seen in humans engaging in industrialized lifestyles but also higher compared to wild primates that typically consume fiber-rich diets.IMPORTANCE The results of this study indicate a discordance between gut microbiome composition and evolutionary history in primates, calling into question previous notions about host genetic control of the primate gut microbiome. Microbiome similarities between humans consuming nonindustrialized diets and monkeys characterized by subsisting on eclectic, omnivorous diets also raise questions about the ecological and nutritional drivers shaping the human gut microbiome. Moreover, a more detailed understanding of the factors associated with gut microbiome plasticity in primates offers a framework to understand why humans following industrialized lifestyles have deviated from states thought to reflect human evolutionary history. The results also provide perspectives for developing therapeutic dietary manipulations that can reset configurations of the gut microbiome to potentially improve human health.
Department of Animal and Range Sciences Montana State University Bozeman Montana USA
Department of Animal Science University of Minnesota Twin Cities St Paul Minnesota USA
Department of Anthropology Dartmouth College Hanover New Hampshire USA
Department of Anthropology Northwestern University Evanston Illinois USA
Department of Anthropology Purdue University West Lafayette Indiana USA
Department of Anthropology University of Colorado Boulder Colorado USA
Department of Anthropology University of Illinois at Urbana Champaign Champaign Illinois USA
Department of Anthropology University of North Carolina Wilmington North Carolina USA
Department of Biology Loyola University Chicago Chicago Illinois USA
J Craig Venter Institute La Jolla California USA
World Wildlife Fund Dzanga Sangha Protected Areas Bayanga Central African Republic
Citace poskytuje Crossref.org
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