-
Something wrong with this record ?
Ferroptosis-Related Long Noncoding RNA Signature Predicts Prognosis of Clear Cell Renal Carcinoma
JW. Liu, F. Supandi, SK. Dhillon
Language English Country Czech Republic
Document type Journal Article
NLK
Free Medical Journals
from 2000
Freely Accessible Science Journals
from 2000
ProQuest Central
from 2005-01-01
Health & Medicine (ProQuest)
from 2005-01-01
ROAD: Directory of Open Access Scholarly Resources
from 2000
- MeSH
- Ferroptosis * genetics MeSH
- Carcinoma, Renal Cell * genetics pathology MeSH
- Humans MeSH
- Biomarkers, Tumor genetics metabolism MeSH
- Tumor Microenvironment MeSH
- Kidney Neoplasms * genetics pathology MeSH
- RNA, Long Noncoding * genetics MeSH
- Iron MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
Clear cell renal cell carcinoma (ccRCC) is very common and accounts for most kidney cancer deaths. While many studies are being conducted in finding the prognostic signatures of ccRCC, we believe that ferroptosis, which involves programmed cell death dependent on iron accumulation, has therapeutic potential in ccRCC. Recent research has shown that long noncoding RNAs (lncRNAs) are involved in ferroptosis-related tumour processes and are closely related to survival in patients with ccRCC. Hence, in this study we aim to further explore the role of ferroptosis-related lncRNAs (FRLs) in ccRCC, hoping to establish a signature to predict the survival outcome of ccRCC. We analysed transcriptome data from The Cancer Genome Atlas database (TCGA) and ferroptosis-related genes (FRGs) from FerrDb to identify FRLs using Pearson's correlation. Lasso Cox regression analysis and multivariate Cox proportional hazards models screened seventeen optimal FRLs for developing prognostic signatures. Kaplan-Meier survival curves and ROC curves were then plotted for validating the sensitivity, specificity, and accuracy of the identified signatures. Gene Set Enrichment Analysis and CIBERSORT algorithm were deployed to explore the role of these FRLs in the tumour microenvironment. It was concluded that these models demonstrate excellent performance in predicting prognosis among patients with ccRCC, also indicating association with the clinicopathologic parameters such as tumour grade, tumour stage and tumour immune infiltration. In conclusion, our findings provide novel insights into ferroptosis-related lncRNAs in ccRCC, which are important targets for investigating the tumorigenesis of ccRCC.
- 000
- 00000naa a2200000 a 4500
- 001
- bmc22026975
- 003
- CZ-PrNML
- 005
- 20230213133250.0
- 007
- ta
- 008
- 221108s2022 xr da f 000 0|eng||
- 009
- AR
- 035 __
- $a (PubMed)36201853
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xr
- 100 1_
- $a Liu, J. W. $u Institute of Biological Sciences, Faculty of Science, University Malaya, Kuala Lumpur, Malaysia
- 245 10
- $a Ferroptosis-Related Long Noncoding RNA Signature Predicts Prognosis of Clear Cell Renal Carcinoma / $c JW. Liu, F. Supandi, SK. Dhillon
- 520 9_
- $a Clear cell renal cell carcinoma (ccRCC) is very common and accounts for most kidney cancer deaths. While many studies are being conducted in finding the prognostic signatures of ccRCC, we believe that ferroptosis, which involves programmed cell death dependent on iron accumulation, has therapeutic potential in ccRCC. Recent research has shown that long noncoding RNAs (lncRNAs) are involved in ferroptosis-related tumour processes and are closely related to survival in patients with ccRCC. Hence, in this study we aim to further explore the role of ferroptosis-related lncRNAs (FRLs) in ccRCC, hoping to establish a signature to predict the survival outcome of ccRCC. We analysed transcriptome data from The Cancer Genome Atlas database (TCGA) and ferroptosis-related genes (FRGs) from FerrDb to identify FRLs using Pearson's correlation. Lasso Cox regression analysis and multivariate Cox proportional hazards models screened seventeen optimal FRLs for developing prognostic signatures. Kaplan-Meier survival curves and ROC curves were then plotted for validating the sensitivity, specificity, and accuracy of the identified signatures. Gene Set Enrichment Analysis and CIBERSORT algorithm were deployed to explore the role of these FRLs in the tumour microenvironment. It was concluded that these models demonstrate excellent performance in predicting prognosis among patients with ccRCC, also indicating association with the clinicopathologic parameters such as tumour grade, tumour stage and tumour immune infiltration. In conclusion, our findings provide novel insights into ferroptosis-related lncRNAs in ccRCC, which are important targets for investigating the tumorigenesis of ccRCC.
- 650 _2
- $a nádorové biomarkery $x genetika $x metabolismus $7 D014408
- 650 12
- $a karcinom z renálních buněk $x genetika $x patologie $7 D002292
- 650 12
- $a ferroptóza $x genetika $7 D000079403
- 650 _2
- $a lidé $7 D006801
- 650 _2
- $a železo $7 D007501
- 650 12
- $a nádory ledvin $x genetika $x patologie $7 D007680
- 650 12
- $a RNA dlouhá nekódující $x genetika $7 D062085
- 650 _2
- $a nádorové mikroprostředí $7 D059016
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a Supandi, F. $u Institute of Biological Sciences, Faculty of Science, University Malaya, Kuala Lumpur, Malaysia
- 700 1_
- $a Dhillon, S. K. $u Institute of Biological Sciences, Faculty of Science, University Malaya, Kuala Lumpur, Malaysia
- 773 0_
- $w MED00011004 $t Folia biologica $x 0015-5500 $g Roč. 68, č. 1 (2022), s. 1-15
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/36201853 $y Pubmed
- 856 41
- $u https://fb.cuni.cz/file/6209/fb2022a0001.pdf $y plný text volně přístupný
- 910 __
- $a ABA008 $b A 970 $c 89 $y p $z 0
- 990 __
- $a 20221108 $b ABA008
- 991 __
- $a 20230213133248 $b ABA008
- 999 __
- $a ok $b bmc $g 1897120 $s 1178282
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2022 $b 68 $c 1 $d 1-15 $e - $i 0015-5500 $m Folia biologica (Praha) $n Folia biol. (Praha) $x MED00011004
- LZP __
- $b NLK138 $a Pubmed-20221108