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Multiple mutations of SARS-CoV-2 Omicron BA.2 variant orchestrate its virological characteristics

I. Kimura, D. Yamasoba, H. Nasser, H. Ito, J. Zahradnik, J. Wu, S. Fujita, K. Uriu, J. Sasaki, T. Tamura, R. Suzuki, S. Deguchi, A. Plianchaisuk, K. Yoshimatsu, Y. Kazuma, S. Mitoma, G. Schreiber, H. Asakura, M. Nagashima, K. Sadamasu, K....

Kimura, Izumi
Author Kimura, Izumi Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan
Yamasoba, Daichi
Author Yamasoba, Daichi Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan Faculty of Medicine, Kobe University , Kobe, Japan
Nasser, Hesham
Author Nasser, Hesham Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus infection, Kumamoto University , Kumamoto, Japan Department of Clinical Pathology, Faculty of Medicine, Suez Canal University , Ismailia, Egypt
Ito, Hayato
Author Ito, Hayato Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University , Sapporo, Japan
Zahradnik, Jiri
Author Zahradnik, Jiri Department of Biomolecular Sciences, Weizmann Institute of Science , Rehovot, Israel First Medical Faculty at Biocev, Charles University , Vestec-Prague, Czechia
Wu, Jiaqi
Author Wu, Jiaqi Department of Molecular Life Science, Tokai University School of Medicine , Isehara, Japan
Fujita, Shigeru
Author Fujita, Shigeru Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan Graduate School of Medicine, The University of Tokyo , Tokyo, Japan
Uriu, Keiya
Author Uriu, Keiya Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan Graduate School of Medicine, The University of Tokyo , Tokyo, Japan
Sasaki, Jiei
Author Sasaki, Jiei Laboratory of Medical Virology, Institute for Life and Medical Sciences, Kyoto University , Kyoto, Japan
Tamura, Tomokazu
Author Tamura, Tomokazu ORCID Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University , Sapporo, Japan Institute for Vaccine Research and Development (HU-IVReD), Hokkaido University , Sapporo, Japan
Suzuki, Rigel
Author Suzuki, Rigel Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University , Sapporo, Japan Institute for Vaccine Research and Development (HU-IVReD), Hokkaido University , Sapporo, Japan
Deguchi, Sayaka
Author Deguchi, Sayaka Center for iPS Cell Research and Application (CiRA), Kyoto University , Kyoto, Japan
Plianchaisuk, Arnon
Author Plianchaisuk, Arnon Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan
Yoshimatsu, Kumiko
Author Yoshimatsu, Kumiko Institute for Genetic Medicine, Hokkaido University , Sapporo, Japan
Kazuma, Yasuhiro
Author Kazuma, Yasuhiro Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University , Kyoto, Japan
Mitoma, Shuya
Author Mitoma, Shuya Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki , Miyazaki, Japan Graduate School of Medicine and Veterinary Medicine, University of Miyazaki , Miyazaki, Japan
Schreiber, Gideon
Author Schreiber, Gideon ORCID Department of Biomolecular Sciences, Weizmann Institute of Science , Rehovot, Israel
Asakura, Hiroyuki
Author Asakura, Hiroyuki Tokyo Metropolitan Institute of Public Health , Tokyo, Japan
Nagashima, Mami
Author Nagashima, Mami Tokyo Metropolitan Institute of Public Health , Tokyo, Japan
Sadamasu, Kenji
Author Sadamasu, Kenji Tokyo Metropolitan Institute of Public Health , Tokyo, Japan
Yoshimura, Kazuhisa
Author Yoshimura, Kazuhisa Tokyo Metropolitan Institute of Public Health , Tokyo, Japan
Takaori-Kondo, Akifumi
Author Takaori-Kondo, Akifumi Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University , Kyoto, Japan
Ito, Jumpei
Author Ito, Jumpei Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan
Shirakawa, Kotaro
Author Shirakawa, Kotaro ORCID Department of Hematology and Oncology, Graduate School of Medicine, Kyoto University , Kyoto, Japan
Takayama, Kazuo
Author Takayama, Kazuo ORCID Center for iPS Cell Research and Application (CiRA), Kyoto University , Kyoto, Japan AMED-CREST, Japan Agency for Medical Research and Development (AMED) , Tokyo, Japan
Irie, Takashi
Author Irie, Takashi ORCID Graduate School of Biomedical and Health Sciences, Hiroshima University , Hiroshima, Japan
Hashiguchi, Takao
Author Hashiguchi, Takao ORCID Laboratory of Medical Virology, Institute for Life and Medical Sciences, Kyoto University , Kyoto, Japan
Nakagawa, So
Author Nakagawa, So ORCID Department of Molecular Life Science, Tokai University School of Medicine , Isehara, Japan CREST, Japan Science and Technology Agency , Saitama, Japan Bioinformation and DDBJ Center, National Institute of Genetics , Mishima, Japan
Fukuhara, Takasuke
Author Fukuhara, Takasuke ORCID Department of Microbiology and Immunology, Faculty of Medicine, Hokkaido University , Sapporo, Japan Institute for Vaccine Research and Development (HU-IVReD), Hokkaido University , Sapporo, Japan AMED-CREST, Japan Agency for Medical Research and Development (AMED) , Tokyo, Japan Laboratory of Virus Control, Research Institute for Microbial Diseases, Osaka University , Suita, Japan
Saito, Akatsuki
Author Saito, Akatsuki ORCID Department of Veterinary Science, Faculty of Agriculture, University of Miyazaki , Miyazaki, Japan Graduate School of Medicine and Veterinary Medicine, University of Miyazaki , Miyazaki, Japan Center for Animal Disease Control, University of Miyazaki , Miyazaki, Japan
Ikeda, Terumasa
Author Ikeda, Terumasa ORCID Division of Molecular Virology and Genetics, Joint Research Center for Human Retrovirus infection, Kumamoto University , Kumamoto, Japan
Sato, Kei
Author Sato, Kei ORCID Division of Systems Virology, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan Graduate School of Medicine, The University of Tokyo , Tokyo, Japan International Research Center for Infectious Diseases, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan CREST, Japan Science and Technology Agency , Saitama, Japan International Vaccine Design Center, The Institute of Medical Science, The University of Tokyo , Tokyo, Japan Graduate School of Frontier Sciences, The University of Tokyo , Kashiwa, Japan Collaboration Unit for Infection, Joint Research Center for Human Retrovirus infection, Kumamoto University , Kumamoto, Japan
Genotype to Phenotype Japan (G2P-Japan) Consortium
Author Genotype to Phenotype Japan (G2P-Japan) Consortium

Journal of virology. 2023 ; 97 (10) : e0101123. [pub] 20231005

J Virol
ISSN 1098-5514
Medvik
Source

Language English Country United States

Document type Journal Article

Persistent link https://www.medvik.cz/link/bmc24000960

Grant support
JP223fa627001 Japan Agency for Medical Research and Development (AMED)
JP223fa727002 Japan Agency for Medical Research and Development (AMED)
JP223fa627009 Japan Agency for Medical Research and Development (AMED)
JP22fk0108511 Japan Agency for Medical Research and Development (AMED)
JP22fk0108516 Japan Agency for Medical Research and Development (AMED)
JP22fk0108506 Japan Agency for Medical Research and Development (AMED)
JP22fk0108146 Japan Agency for Medical Research and Development (AMED)
JP21fk0108494 Japan Agency for Medical Research and Development (AMED)
JP21fk0108425 Japan Agency for Medical Research and Development (AMED)
JP21fk0108432 Japan Agency for Medical Research and Development (AMED)
JP21fk0108465 Japan Agency for Medical Research and Development (AMED)
JP21fk0108493 Japan Agency for Medical Research and Development (AMED)
JP22fk0108516 Japan Agency for Medical Research and Development (AMED)
JP21fk0108574 Japan Agency for Medical Research and Development (AMED)
JP22fk0108617 Japan Agency for Medical Research and Development (AMED)
JP22fk0410033 Japan Agency for Medical Research and Development (AMED)
JP22fk0410039 Japan Agency for Medical Research and Development (AMED)
JP22fk0410047 Japan Agency for Medical Research and Development (AMED)
JP22fk0410055 Japan Agency for Medical Research and Development (AMED)
JP23fk0410047 Japan Agency for Medical Research and Development (AMED)
JP23fk0410056 Japan Agency for Medical Research and Development (AMED)
JP23fk0410058 Japan Agency for Medical Research and Development (AMED)
JP22jk0210039 Japan Agency for Medical Research and Development (AMED)
JP22wm0325009 Japan Agency for Medical Research and Development (AMED)
CREST JP21gm1610005 Japan Agency for Medical Research and Development (AMED)
CREST JP22gm1610008 Japan Agency for Medical Research and Development (AMED)
PRESTO JPMJPR22R1 Japan Science an Technology Agency (JST)
CREST JPMJCR20H4 Japan Science an Technology Agency (JST)
CREST JPMJCR20H6 Japan Science an Technology Agency (JST)
CREST JPMJCR20H8 Japan Science an Technology Agency (JST)
SPRING JPMJSP2108 Japan Science an Technology Agency (JST)
KAKENHI 20K15767 Japan Society for the Promotion of Science (JSPS)
KAKENHI 23K14526 Japan Society for the Promotion of Science (JSPS)
JPJSCCA20190008 Japan Society for the Promotion of Science (JSPS)
KAKENHI 20H05773 Japan Society for the Promotion of Science (JSPS)
KAKENHI 21H02736 Japan Society for the Promotion of Science (JSPS)
KAKENHI 22K07103 Japan Society for the Promotion of Science (JSPS)
KAKENHI 22K16375 Japan Society for the Promotion of Science (JSPS)
DC2 22J11578 Japan Society for the Promotion of Science (JSPS)
JSPS Leading Initiative for Excellent Young Researchers (LEADER); number has not been assigned Japan Society for the Promotion of Science (JSPS)
Takeda Science Foundation
Mochida Memorial Foundation for Medical and Pharmaceutical Research
Naito Foundation
Shin-Nihon Foundation of Advanced Medical Research
Waksman Foundation of Japan
Intramural grant from Kumamoto University COVID-19 Research Projects (AMABIE)
Ito Foundation Research Grant
International Joint Research Project of the Institute of Medical Science, the University of Tokyo
LX22NPO5103 European Union, Next Generation EU

Online Full text

NLK Free Medical Journals from 1967 to 6 months ago
Freely Accessible Science Journals from 1967 to 6 months ago
PubMed Central from 1967 to 1 year ago
Europe PubMed Central from 1967 to 6 months ago
Open Access Digital Library from 1967-02-01
Open Access Digital Library from 1967-02-01

PubMed 37796123
DOI 10.1128/jvi.01011-23
Knihovny.cz E-resources

MeSH
COVID-19 * MeSH
Spike Glycoprotein, Coronavirus genetics MeSH
Humans MeSH
Mutation MeSH
SARS-CoV-2 genetics MeSH
Check Tag
Humans MeSH
Publication type
Journal Article MeSH

Most studies investigating the characteristics of emerging SARS-CoV-2 variants have been focusing on mutations in the spike proteins that affect viral infectivity, fusogenicity, and pathogenicity. However, few studies have addressed how naturally occurring mutations in the non-spike regions of the SARS-CoV-2 genome impact virological properties. In this study, we proved that multiple SARS-CoV-2 Omicron BA.2 mutations, one in the spike protein and another downstream of the spike gene, orchestrally characterize this variant, shedding light on the importance of Omicron BA.2 mutations out of the spike protein.

1st Medical Faculty at Biocev Charles University Vestec Prague Czechia

AMED CREST Japan Agency for Medical Research and Development Tokyo Japan

Bioinformation and DDBJ Center National Institute of Genetics Mishima Japan

Center for Animal Disease Control University of Miyazaki Miyazaki Japan

Center for iPS Cell Research and Application Kyoto University Kyoto Japan

Collaboration Unit for Infection Joint Research Center for Human Retrovirus infection Kumamoto University Kumamoto Japan

CREST Japan Science and Technology Agency Saitama Japan

Department of Biomolecular Sciences Weizmann Institute of Science Rehovot Israel

Department of Clinical Pathology Faculty of Medicine Suez Canal University Ismailia Egypt

Department of Hematology and Oncology Graduate School of Medicine Kyoto University Kyoto Japan

Department of Microbiology and Immunology Faculty of Medicine Hokkaido University Sapporo Japan

Department of Molecular Life Science Tokai University School of Medicine Isehara Japan

Department of Veterinary Science Faculty of Agriculture University of Miyazaki Miyazaki Japan

Division of Molecular Virology and Genetics Joint Research Center for Human Retrovirus infection Kumamoto University Kumamoto Japan

Division of Systems Virology Department of Microbiology and Immunology The Institute of Medical Science The University of Tokyo Tokyo Japan

Faculty of Medicine Kobe University Kobe Japan

Graduate School of Biomedical and Health Sciences Hiroshima University Hiroshima Japan

Graduate School of Frontier Sciences The University of Tokyo Kashiwa Japan

Graduate School of Medicine and Veterinary Medicine University of Miyazaki Miyazaki Japan

Graduate School of Medicine The University of Tokyo Tokyo Japan

Institute for Genetic Medicine Hokkaido University Sapporo Japan

Institute for Vaccine Research and Development Hokkaido University Sapporo Japan

International Research Center for Infectious Diseases The Institute of Medical Science The University of Tokyo Tokyo Japan

International Vaccine Design Center The Institute of Medical Science The University of Tokyo Tokyo Japan

Laboratory of Medical Virology Institute for Life and Medical Sciences Kyoto University Kyoto Japan

Laboratory of Virus Control Research Institute for Microbial Diseases Osaka University Suita Japan

Tokyo Metropolitan Institute of Public Health Tokyo Japan

References provided by Crossref.org

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