• Je něco špatně v tomto záznamu ?

Phenotypic and genotypic diversity of root nodule bacteria from wild Lathyrus and Vicia species in Gaziantep, Turkey

S. Basbuga, S. Basbuga, C. Can, F. Yayla

. 2024 ; 69 (5) : 1145-1157. [pub] 20240325

Status minimální Jazyk angličtina Země Česko

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/bmc24017586

This study identified the phenotypic and genotypic characteristics of the bacteria that nodulate wild Lathyrus and Vicia species natural distribution in the Gaziantep province of Turkey. Principle component analysis of phenotypic features revealed that rhizobial isolates were highly resistant to stress factors such as high salt, pH and temperature. They were found to be highly sensitive to the concentrations (mg/mL) of the antibiotics neomycin 10, kanamycin, and tetracycline 5, as well as the heavy metals Ni 10, and Cu 10, and 5. As a result of REP-PCR analysis, it was determined that the rhizobial isolates were quite diverse, and 5 main groups and many subgroups being found. All of the isolates nodulating wild Vicia species were found to be related to Rhizobium sp., and these isolates were found to be in Clades II, III, IV, and V of the phylogenetic tree based on 16S rRNA. The isolates that nodulated wild Lathyrus species were in Clades I, II, IV, V, VI, VII, and VIII, and they were closely related to Rhizobium leguminasorum, Rhizobium sp., Phyllobacterium sp., Serratia sp., and Pseudomonas sp. According to the genetic analyses, the isolates could not be classified at the species level, the similarity ratio was low, they formed a distinct group that was supported by strong bootstrap values in the phylogenetic tree, and the differences discovered in the network analysis revealed the diversity among the isolates and gave important findings that these isolates may be new species.

Citace poskytuje Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc24017586
003      
CZ-PrNML
005      
20241004145958.0
007      
ta
008      
241004s2024 xr f 000 0|eng||
009      
AR
024    7_
$a 10.1007/s12223-024-01156-1 $2 doi
035    __
$a (PubMed)38526677
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a xr
100    1_
$a Basbuga, Sevil $u Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey. sevilgunes.9@gmail.com $1 https://orcid.org/0000000215671873
245    10
$a Phenotypic and genotypic diversity of root nodule bacteria from wild Lathyrus and Vicia species in Gaziantep, Turkey / $c S. Basbuga, S. Basbuga, C. Can, F. Yayla
520    9_
$a This study identified the phenotypic and genotypic characteristics of the bacteria that nodulate wild Lathyrus and Vicia species natural distribution in the Gaziantep province of Turkey. Principle component analysis of phenotypic features revealed that rhizobial isolates were highly resistant to stress factors such as high salt, pH and temperature. They were found to be highly sensitive to the concentrations (mg/mL) of the antibiotics neomycin 10, kanamycin, and tetracycline 5, as well as the heavy metals Ni 10, and Cu 10, and 5. As a result of REP-PCR analysis, it was determined that the rhizobial isolates were quite diverse, and 5 main groups and many subgroups being found. All of the isolates nodulating wild Vicia species were found to be related to Rhizobium sp., and these isolates were found to be in Clades II, III, IV, and V of the phylogenetic tree based on 16S rRNA. The isolates that nodulated wild Lathyrus species were in Clades I, II, IV, V, VI, VII, and VIII, and they were closely related to Rhizobium leguminasorum, Rhizobium sp., Phyllobacterium sp., Serratia sp., and Pseudomonas sp. According to the genetic analyses, the isolates could not be classified at the species level, the similarity ratio was low, they formed a distinct group that was supported by strong bootstrap values in the phylogenetic tree, and the differences discovered in the network analysis revealed the diversity among the isolates and gave important findings that these isolates may be new species.
650    12
$a fylogeneze $7 D010802
650    12
$a RNA ribozomální 16S $x genetika $7 D012336
650    12
$a kořenové hlízky rostlin $x mikrobiologie $7 D053204
650    12
$a Lathyrus $x mikrobiologie $7 D027807
650    12
$a genotyp $7 D005838
650    12
$a vikev $x mikrobiologie $7 D031306
650    _2
$a DNA bakterií $x genetika $7 D004269
650    _2
$a fenotyp $7 D010641
650    _2
$a antibakteriální látky $x farmakologie $7 D000900
650    _2
$a genetická variace $7 D014644
650    _2
$a Bacteria $x genetika $x klasifikace $x izolace a purifikace $x účinky léků $7 D001419
650    _2
$a těžké kovy $7 D019216
650    _2
$a Rhizobium $x genetika $x klasifikace $x izolace a purifikace $7 D012231
651    _2
$a Turecko $7 D014421
655    _2
$a časopisecké články $7 D016428
700    1_
$a Basbuga, Selcuk $u Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
700    1_
$a Can, Canan $u Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
700    1_
$a Yayla, Fatih $u Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
773    0_
$w MED00011005 $t Folia microbiologica $x 1874-9356 $g Roč. 69, č. 5 (2024), s. 1145-1157
856    41
$u https://pubmed.ncbi.nlm.nih.gov/38526677 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y - $z 0
990    __
$a 20241004 $b ABA008
991    __
$a 20241004145950 $b ABA008
999    __
$a min $b bmc $g 2190186 $s 1229536
BAS    __
$a 3
BAS    __
$a PreBMC-MEDLINE
BMC    __
$a 2024 $b 69 $c 5 $d 1145-1157 $e 20240325 $i 1874-9356 $m Folia microbiologica $n Folia Microbiol (Praha) $x MED00011005
LZP    __
$a Pubmed-20241004

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...