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The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

D. Kopczynski, CS. Ejsing, JG. McDonald, T. Bamba, ES. Baker, J. Bertrand-Michel, B. Brügger, C. Coman, SR. Ellis, TJ. Garrett, WJ. Griffiths, XL. Guan, X. Han, M. Höring, M. Holčapek, N. Hoffmann, K. Huynh, R. Lehmann, JW. Jones, R....

. 2024 ; 65 (9) : 100621. [pub] 20240814

Language English Country United States

Document type Journal Article

Persistent link   https://www.medvik.cz/link/bmc24019060

The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

Baker Heart and Diabetes Institute Melbourne VIC Australia

Barshop Institute for Longevity and Aging Studies University of Texas Health Science Center at San Antonio San Antonio Texas USA

Biological Sciences Division Pacific Northwest National Laboratory Richland Washington USA

Cell Biology and Biophysics Unit European Molecular Biology Laboratory Heidelberg Germany

Center for Human Nutrition and Department of Molecular Genetics UT Southwestern Medical Center Dallas Texas USA

Core Facility Mass Spectrometry and Lipidomics ZMF Medical University of Graz Graz Austria

Department of Analytical Chemistry Faculty of Chemical Technology University of Pardubice Pardubice Czech Republic

Department of Analytical Chemistry Faculty of Chemistry University of Vienna Vienna Austria

Department of Biochemistry and Molecular Biology VILLUM Center for Bioanalytical Sciences University of Southern Denmark Odense Denmark

Department of Cardiovascular Research Translation and Implementation La Trobe University Bundoora VIC Australia

Department of Chemistry University of North Carolina at Chapel Hill Chapel Hill North Carolina USA

Department of Medicine Duke University Durham North Carolina USA

Department of Pathology Immunology and Laboratory Medicine University of Florida Gainesville Florida USA

Department of Pharmaceutical Sciences School of Pharmacy University of Maryland Baltimore Maryland USA

Department of Psychiatry and Behavioural Sciences Duke University Durham North Carolina USA

Division of Bioanalytical Chemistry Research Center Borstel Leibniz Lung Center Borstel Germany

Division of Metabolomics Mass Spectrometry Center Medical Research Center for High Depth Omics Medical Institute of Bioregulation Kyushu University Fukuoka Japan

Duke Institute of Brain Sciences Duke University Durham North Carolina USA

European Molecular Biology Laboratory European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge UK

German Center for Infection Research Thematic Translational Unit Tuberculosis Partner Site Hamburg Lübeck Borstel Riems Germany

German Center for Lung Research Borstel Germany

Heidelberg University Biochemistry Center University of Heidelberg Heidelberg Germany

Institute for Bio and Geosciences Forschungszentrum Jülich GmbH Jülich Germany

Institute for Clinical Chemistry and Pathobiochemistry Department for Diagnostic Laboratory Medicine University Hospital Tuebingen Tuebingen Germany

Institute of Clinical Chemistry and Laboratory Medicine University of Regensburg Regensburg Germany

Kansas Lipidomics Research Center Division of Biology Kansas State University Manhattan Kansas USA

Laboratory of Biomedical and Analytical Sciences Faculty of Pharma Science Teikyo University Tokyo Japan

Lee Kong Chian School of Medicine Nanyang Technological University Singapore Singapore

Lipidomics Consulting Ltd Esbo Finland

Max Planck Institute of Molecular Cell Biology and Genetics Dresden Germany

MetaboHUB Metatoul National Infrastructure of Metabolomics and Fluxomics Inserm I2MC Toulouse France

MOE Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology Department of Chemistry Tsinghua University Beijing China

Molecular Horizons and School of Chemistry and Molecular Bioscience University of Wollongong Wollongong NSW Australia

Signature Research Program in Cardiovascular and Metabolic Disorders Duke NUS Medical School Singapore Singapore

Singapore Lipidomics Incubator Department of Biochemistry YLL School of Medicine National University of Singapore Singapore Singapore

Swansea University Medical School Swansea Wales UK

Systems Immunity Research Institute School of Medicine Cardiff University Cardiff UK

References provided by Crossref.org

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