Determination and restrained least-squares refinement of the structures of ribonuclease Sa and its complex with 3'-guanylic acid at 1.8 A resolution
Language English Country United States Media print
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
1654932
Knihovny.cz E-resources
- MeSH
- Chemical Phenomena MeSH
- X-Ray Diffraction MeSH
- Chemistry, Physical MeSH
- Protein Conformation MeSH
- Crystallization MeSH
- Guanosine Monophosphate metabolism MeSH
- Molecular Sequence Data MeSH
- Molecular Structure MeSH
- Ribonucleases chemistry metabolism MeSH
- Amino Acid Sequence MeSH
- Streptomyces aureofaciens enzymology MeSH
- Binding Sites MeSH
- Hydrogen Bonding MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- 3'-guanylic acid MeSH Browser
- Guanosine Monophosphate MeSH
- Ribonucleases MeSH
The crystal structures of ribonuclease from Streptomyces aureofaciens (RNase Sa) and its complex with 3'-guanylic acid (guanosine 3'-monophosphate, 3'-GMP) have been determined by the method of isomorphous replacement. The atomic parameters have been refined by restrained least-squares minimization using data in the resolution range 10.0-1.8 A. All protein atoms and more than 230 water atoms in the two crystal structures have been refined to crystallographic R factors of 0.172 and 0.175 respectively. The estimated r.m.s. error in the atomic positions ranges from 0.2 A for well-defined atoms to about 0.5 A for more poorly defined atoms. There are two enzyme molecules in the asymmetric unit, built independently, and referred to as molecules A and B. The value of the average B factor for protein atoms in both structures is about 19 A2 and for water molecules about 35 A2. Electron density for the substrate analogue 3'-GMP was found only at the active site of molecule A. The density was very clear and the positions of all 3'-GMP atoms were refined with precision comparable to that of the protein.