Independent component analysis and decision trees for ECG holter recording de-noising
Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
24905359
PubMed Central
PMC4048160
DOI
10.1371/journal.pone.0098450
PII: PONE-D-13-47704
Knihovny.cz E-zdroje
- MeSH
- algoritmy MeSH
- analýza hlavních komponent MeSH
- elektrokardiografie ambulantní metody MeSH
- interpretace statistických dat MeSH
- poměr signál - šum * MeSH
- rozhodovací stromy MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
We have developed a method focusing on ECG signal de-noising using Independent component analysis (ICA). This approach combines JADE source separation and binary decision tree for identification and subsequent ECG noise removal. In order to to test the efficiency of this method comparison to standard filtering a wavelet- based de-noising method was used. Freely data available at Physionet medical data storage were evaluated. Evaluation criteria was root mean square error (RMSE) between original ECG and filtered data contaminated with artificial noise. Proposed algorithm achieved comparable result in terms of standard noises (power line interference, base line wander, EMG), but noticeably significantly better results were achieved when uncommon noise (electrode cable movement artefact) were compared.
Department of Cardiovascular Diseases ICRC St Anne's Hospital in Brno Brno Czech Republic
Department of Cybernetics FEE CTU Prague Prague Czech Republic
Zobrazit více v PubMed
Wisbeck JO, Barros AK, Yy AKB, Ojeda RG (1998). Application of ica in the separation of breathing artifacts in ecg signals.
Barros AK, Mansour A, Ohnishi N (1998) Removing artifacts from electrocardiographic signals using independent components analysis. Neurocomputing 22: 173–186.
He T, Clifford G, Tarassenko L (2006) Application of independent component analysis in removing artefacts from the electrocardiogram. Neural Computing & Applications 15: 105–116.
Chawla MPS, Verma HK, Kumar V (2008) Artifacts and noise removal in electrocardiograms using independent component analysis. International journal of cardiology 129: 278–281. PubMed
Xing H, Hou J (2009) A noise elimination method for ecg signals. In: Bioinformatics and Biomedical Engineering, 2009. ICBBE 2009. 3rd International Conference on. p. 1–3.
Milanesi M, Martini N, Vanello N, Positano V, Santarelli MF, et al. (2008) Independent component analysis applied to the removal of motion artifacts from electrocardiographic signals. Medical & biological engineering & computing 46: 251–261. PubMed
Agrawal G, Singh M, Singh VR, Singh HR (2008) Reduction of artifacts in 12-channel ecg signals using fastica algorithm. JOURNAL OF SCIENTIFIC & INDUSTRIAL RESEARCH 67: 43–48.
Castells F, Cebrian A, Millet J (2007) The role of independent component analysis in the signal processing of ecg recordings. BIOMEDIZINISCHE TECHNIK 52: 18–24. PubMed
Chawla MPS (2011) Pca and ica processing methods for removal of artifacts and noise in electrocardiograms: A survey and comparison. APPLIED SOFT COMPUTING 11: 2216–2226.
Milanesi M, Martini N, Vanello N, Positano V, Santarelli MF, et al... (2006) Multichannel techniques for motion artifacts removal from electrocardiographic signals. In: 2006 28th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Vols 1-15. 2684–2687. 28th Annual International Conference of the IEEE-Engineering-in-Medicine-and-Biology-Society, New York, NY, AUG 30-SEP 03, 2006. PubMed
Acharyya A, Maharatna K, Al-Hashimi BM, Mondal S (2010) Robust Channel Identification Scheme: Solving Permutation Indeterminacy of ICA for Artifacts Removal from ECG. In: 2010 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC). IEEE Engn Med & Biol Soc (EMBS), IEEE Engineering in Medicine and Biology Society Conference Proceedings, 1142–1145. 32nd Annual International Conference of the IEEE Engineering-in-Medicine-and-Biology-Society (EMBC 10), Buenos Aires, ARGENTINA, AUG 30-SEP 04, 2010. PubMed
DiPietroPaolo D, Mueller HP, Nolte G, Erne SN (2006) Noise reduction in magnetocardiography by singular value decomposition and independent component analysis. MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING 44: 489–499. PubMed
Tu Y, Fu X, Li D, Huang C, Tang Y, et al. (2012) A Novel Method for Automatic Identification of Motion Artifact Beats in ECG Recordings. ANNALS OF BIOMEDICAL ENGINEERING 40: 1917–1928. PubMed
Oster J, Pietquin O, Abaecherli R, Kraemer M, Felblinger J (2009) Independent component analysis-based artefact reduction: application to the electrocardiogram for improved magnetic resonance imaging triggering. PHYSIOLOGICAL MEASUREMENT 30: 1381–1397. PubMed
Romero I (2011) PCA and ICA applied to Noise Reduction in Multi-lead ECG. In: 2011 COMPUTING IN CARDIOLOGY. European Soc Cardiol; Zhejiang Univ; EMB; IEEE; Drager; Mortara; Philips; Univ Rochester, Telemetr & Holter ECG Warehouse; Physiol Measurement; Mindray; GE Healthcare; Zoll; Edan; GSMA, 613–616. Conference on Computing in Cardiology, Hangzhou, PEOPLES R CHINA, SEP 18–21, 2011.
Thomas CG, Harshman RA, Menon RS (2002) Noise reduction in bold-based fmri using component analysis. NeuroImage 17: 1521–1537. PubMed
Kiviniemi V, Kantola JH, Jauhiainen J, Hyvärinen A, Tervonen O (2003) Independent component analysis of nondeterministic fmri signal sources. Neuroimage 19: 253–260. PubMed
Liu Y, Hu D, Zhou Z, Shen H, Wang X (2008) fmri noise reduction based on canonical correlation analysis and surrogate test. Selected Topics in Signal Processing, IEEE Journal of 2: 870–878.
Goldberger AL, Amaral LAN, Glass L, Hausdorff JM, Ivanov PC, et al. (2000) PhysioBank, PhysioToolkit, and PhysioNet: Components of a New Research Resource for Complex Physiologic Signals. Circulation 101: e215–220. PubMed
Taddei A, Distante G, Emdin M, Pisani P, Moody GB, et al. (1992) The european st-t database: standard for evaluating systems for the analysis of st-t changes in ambulatory electrocardiography. European heart journal 13: 1164–1172. PubMed
Jager F, Taddei A, Moody GB, Emdin M, Antolič G, et al. (2003) Long-term st database: A reference for the development and evaluation of automated ischaemia detectors and for the study of the dynamics of myocardial ischaemia. Medical and Biological Engineering and Computing 41: 172–182. PubMed
Laguna P, Mark RG, Goldberg A, Moody GB (1997) Database for evaluation of algorithms for measurement of qt and other waveform intervals in the ecg. In: Computers in Cardiology. 673–676.
Albrecht P (1983) ST Segment Characterization for Long Term Automated ECG Analysis. Massachusetts Institute of Technology, Department of Electrical Engineering and Computer Science.
Friesen G, Jannett T, Jadallah M, Yates S, Quint S, et al. (1990) A comparison of the noise sensitivity of nine qrs detection algorithms. Biomedical Engineering, IEEE Transactions on 37: 85–98. PubMed
Hyvärinen A, Karhunen J, Oja E (2001) Independent Component Analysis. Wiley.
Jimenez-Gonzalez A, James C (2008) Source separation of foetal heart sounds and maternal activity from single-channel phonograms: A temporal independent component analysis approach. In: Computers in Cardiology 2008: 949–952.
Broomhead D, King GP (1986) Extracting qualitative dynamics from experimental data. Physica D: Nonlinear Phenomena 20: 217–236.
Breiman L (1984) Classification and regression trees. The Wadsworth and Brooks-Cole statistics-probability series. Chapman & Hall.
Moody G, Mark R (2001) The impact of the mit-bih arrhythmia database. Engineering in Medicine and Biology Magazine, IEEE 20: 45–50. PubMed
Widrow B, Glover Jr J, McCool J (1975) Adaptive noise cancelling: principles and applications. Proceedings of the IEEE 63: 1692–1716.
Hirano K, Nishimura S, Mitra SK (1974) Design of digital notch filters. IEEE Transactions on Communications COM-22: 964–970.
Kuzilek J (2013) Independent Component Analysis: Applications in ECG signal processing. Ph.D. thesis, Czech Technical University.
Patil P, Chavan M (March) A wavelet based method for denoising of biomedical signal. In: Pattern Recognition, Informatics and Medical Engineering (PRIME), 2012 International Conference on. p. 278–283.
Donoho DL (1995) De-noising by soft-thresholding. IEEE Transactions on Information Theory 41: 613–627.
Mallat S (1999) A Wavelt Tour of Signal Processing. Wavelet Analysis & Its Applications. Acad. Press.
Keralapura M, Pourfathi M, Sirkeci-Mergen B (2011) Impact of contrast functions in fast-ica on twin ecg separation. IAENG International Journal of Computer Science 38: 38–47.
Comon P, Jutten C (2010) Handbook of Blind Source Separation. Elsevier.
Pan J, Tompkins WJ (1985) A real-time qrs detection algorithm. Biomedical Engineering, IEEE Transactions on BME-32: 230–236. PubMed