A novel c. 204 Ile68Met germline variant in exon 2 of the mutL homolog 1 gene in a colorectal cancer patient
Status PubMed-not-MEDLINE Language English Country Greece Media print-electronic
Document type Journal Article
PubMed
25435955
PubMed Central
PMC4247117
DOI
10.3892/ol.2014.2666
PII: ol-09-01-0183
Knihovny.cz E-resources
- Keywords
- MutL homolog 1, colorectal cancer, germline mutation,
- Publication type
- Journal Article MeSH
Mutations in the mutL homolog 1 (MLH1) gene are frequent in patients with hereditary non-polyposis colorectal cancer (CRC). The MLH1 gene was screened for mutations in patients with sporadic CRC. The nucleotide sequences for all 19 exons of MLH1 were analyzed by high resolution melting and sequenced in a group of 104 sporadic CRC patients, and the results were verified in a replication group of 1,095 patients and 1,469 controls. Different melting profiles for exon 2 of the MLH1 gene were observed in the germline DNA of one patient. Sequencing of the patient's DNA resulted in the identification of a heterozygous C>G variant at c.204, which resulted in an Ile68Met change in the amino acid. A detailed search of the National Center for Biotechnology Information and the 1000 Genomes databases indicated that the detected variant was unique. According to the SIFT and PolyPhen-2 algorithms, the substitution of Ile to Met was predicted to decrease the activity of the MLH1 protein. The newly identified, functional germline variant was not present in any other CRC patient or control. Thus, a novel germline variant in the MLH1 gene was identified, representing a rare event in sporadic CRC. The occurrence and relevance of this mutation in other types of cancer requires additional investigation.
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Pritchard CC, Grady WM. Colorectal cancer molecular biology moves into clinical practice. Gut. 2011;60:116–129. doi: 10.1136/gut.2009.206250. PubMed DOI PMC
Cannavo E, Gerrits B, Marra G, Schlapbach R, Jiricny J. Characterization of the interactome of the human MutL homologues MLH1, PMS1, and PMS2. J Biol Chem. 2007;282:2976–2986. doi: 10.1074/jbc.M609989200. PubMed DOI
Nystrom-Lahti M, Wu Y, Moisio AL, et al. DNA mismatch repair gene mutations in 55 kindreds with verified or putative hereditary non-polyposis colorectal cancer. Hum Mol Genet. 1996;5:763–769. doi: 10.1093/hmg/5.6.763. PubMed DOI
Bianchi F, Raponi M, Piva F, et al. An intronic mutation in MLH1 associated with familial colon and breast cancer. Fam Cancer. 2011;10:27–35. doi: 10.1007/s10689-010-9371-4. PubMed DOI PMC
Kolodner RD, Tytell JD, Schmeits JL, et al. Germ-line msh6 mutations in colorectal cancer families. Cancer Res. 1999;59:5068–5074. PubMed
Naccarati A, Pardini B, Stefano L, et al. Polymorphisms in miRNA-binding sites of nucleotide excision repair genes and colorectal cancer risk. Carcinogenesis. 2012;33:1346–1351. doi: 10.1093/carcin/bgs172. PubMed DOI
Pardini B, Rosa F, Barone E, et al. Variation within 3′-UTRs of base excision repair genes and response to therapy in colorectal cancer patients: A potential modulation of microRNAs binding. Clin Cancer Res. 2013;19:6044–6056. doi: 10.1158/1078-0432.CCR-13-0314. PubMed DOI
Rouleau E, Lefol C, Bourdon V, et al. Quantitative PCR high-resolution melting (qPCR-HRM) curve analysis, a new approach to simultaneously screen point mutations and large rearrangements: application to MLH1 germline mutations in Lynch syndrome. Hum Mutat. 2009;30:867–875. doi: 10.1002/humu.20947. PubMed DOI
Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 2003;31:3812–3814. doi: 10.1093/nar/gkg509. PubMed DOI PMC
annergard P, Lipford JR, Kolodner R, Frodin JE, Nordenskjold M, Lindblom A. Mutation screening in the hMLH1 gene in Swedish hereditary nonpolyposis colon cancer families. Cancer Res. 1995;55:6092–6096. PubMed
Ellison AR, Lofing J, Bitter GA. Human MutL homolog (MLH1) function in DNA mismatch repair: a prospective screen for missense mutations in the ATPase domain. Nucleic Acid Res. 2004;32:5321–5338. doi: 10.1093/nar/gkh855. PubMed DOI PMC
Boland CR, Goel A. Microsatellite instability in colorectal cancer. Gastroenterology. 138:2073–2087 e2073. PubMed PMC
Kantartzis A, Williams GM, Balakrishnan L, Roberts RL, Surtees JA, Bambara RA. Msh2–Msh3 interferes with Okazaki fragment processing to promote trinucleotide repeat expansions. Cell Rep. 2012;2:216–222. doi: 10.1016/j.celrep.2012.06.020. PubMed DOI PMC