Complete Genome Sequence of Pragia fontium 24613, an Environmental Bacterium from the Family Enterobacteriaceae
Status PubMed-not-MEDLINE Language English Country United States Media electronic
Document type Journal Article
PubMed
26159528
PubMed Central
PMC4498114
DOI
10.1128/genomea.00740-15
PII: 3/4/e00740-15
Knihovny.cz E-resources
- Publication type
- Journal Article MeSH
The complete genome sequence of Pragia fontium 24613 was determined using PacBio RSII, Roche 454, and SOLiD sequencing. A total of 3,579 genes were predicted, including 3,338 protein-coding sequences and 146 pseudogenes. This is the first whole-genome sequence of a strain belonging to the environmental genera of the family Enterobacteriaceae.
Department of Biology Masaryk University Brno Czech Republic
Department of Biomedical Engineering Brno University of Technology Brno Czech Republic
See more in PubMed
Aldová E, Hausner O, Kocmoud Z, Schindler J, Petráš P. 1988. A new member of the family Enterobacteriaceae—Pragia fontium. J Hyg Epidemiol Microbiol Immunol 32:433–436. PubMed
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563–569. doi:10.1038/nmeth.2474. PubMed DOI
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A. 2012. Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649. doi:10.1093/bioinformatics/bts199. PubMed DOI PMC
Gao F, Zhang CT. 2008. Ori-Finder: a Web-based system for finding oriCs in unannotated bacterial genomes. BMC Bioinformatics 9:79. doi:10.1186/1471-2105-9-79. PubMed DOI PMC
Spaepen S, Vanderleyden J. 2011. Auxin and plant-microbe interactions. Cold Spring Harb Perspect Biol 2:a002428. doi:10.1101/cshperspect.a001438. PubMed DOI PMC
Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling