Non-Catalyzed Click Reactions of ADIBO Derivatives with 5-Methyluridine Azides and Conformational Study of the Resulting Triazoles

. 2015 ; 10 (12) : e0144613. [epub] 20151216

Jazyk angličtina Země Spojené státy americké Médium electronic-ecollection

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/pmid26673606

Copper-free click reactions between a dibenzoazocine derivative and azides derived from 5-methyluridine were investigated. The non-catalyzed reaction yielded both regioisomers in an approximately equivalent ratio. The NMR spectra of each regioisomer revealed conformational isomery. The ratio of isomers was dependent on the type of regioisomer and the type of solvent. The synthesis of various analogs, a detailed NMR study and computational modeling provided evidence that the isomery was dependent on the interaction of the azocine and pyrimidine parts.

Zobrazit více v PubMed

Wittig G, Krebs A. On the existence of low-membered cycloalkynes. I. Chem Ber. 1961; 94: 3260–3275.

Carroll L, Evans H L, Aboagye E O, Spivey A C. Bioorthogonal chemistry for pre-targeted molecular imaging—progress and prospects. Org Biomol Chem. 2013; 11(35): 5772–5781. 10.1039/c3ob40897c PubMed DOI

Agard N J, Prescher J A, Bertozzi C R. A strain-promoted [3+2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems. J Am Chem Soc. 2004; 126(46): 15046–15047. PubMed

Baskin J M, Bertozzi C R. Copper-Free Click Chemistry: Bioorthogonal Reagents for Tagging Azides. AldrichimicaActa 2010; 43(1): 15–23.

Jewett J C, Bertozzi C R. Cu-free click cycloaddition reactions in chemical biology. Chem Soc Rev. 2010; 39(4): 1272–1279. PubMed PMC

Debets M F, van Berkel S S, Schoffelen S, Rutjes F P J T, van Hest J C M, van Delft F L. Aza-dibenzocyclooctynes for fast and efficient enzyme PEGylation via copper-free (3 + 2) cycloaddition. Chem Commun. 2010; 46(1): 97–99. PubMed

Soerensen R S, Okholm A H, Schaffert D, Kodal A L B, Gothelf K V, Kjems J. Enzymatic Ligation of Large Biomolecules to DNA ACS Nano 2013; 7(9): 8098–8104. 10.1021/nn403386f PubMed DOI

Prim D, Rebeaud F, Cosandey V, Marti R, Passeraub P, Pfeifer M E. ADIBO-based click chemistry for diagnostic peptide micro-array fabrication: physicochemical and assay characteristics. Molecules 2013; 18: 9833–9849. 10.3390/molecules18089833 PubMed DOI PMC

Bostic H E, Smith M D, Poloukhtine A A, Popik V V, Best M D. Membrane labeling and immobilization via copper-free click chemistry. Chem Commun. 2012; 48(10): 1431–1433. PubMed

Holstein J M, Schulz D, Rentmeister A. Bioorthogonal site-specific labeling of the 5'-cap structure in eukaryotic mRNAs. Chem Commun. 2014; 50(34): 4478–4481. PubMed

Reschke M L, Uprety R, Bodhinayake I, Banu M, Boockvar J A, Sauve A A. Multifunctionalization of cetuximab with bioorthogonal chemistries and parallel EGFR profiling of cell-lines using imaging, FACS and immunoprecipitation approaches. BBA Proteins Proteomics 2014; 1844(12): 2182–2192. 10.1016/j.bbapap.2014.07.017 PubMed DOI

Jang S, Sachin K, Lee H J, Kim D W, Lee H S. Development of a Simple Method for Protein Conjugation by Copper-Free Click Reaction and Its Application to Antibody-Free Western Blot Analysis. Bioconjugate Chem 2012; 23(11): 2256–2261. PubMed

Wang C F, Sarparanta M P, Makila E M, Hyvonen M L K, Laakkonen P M, Salonen J J, et al. Multifunctional porous silicon nanoparticles for cancer theranostics. Biomaterials 2015; 48: 108–118. 10.1016/j.biomaterials.2015.01.008 PubMed DOI

Wang X, Gobbo P, Suchy M, Workentin M S, Hudson R H E. Peptide-decorated gold nanoparticles via strain-promoted azide-alkyne cycloaddition and post assembly deprotection. RSC Adv. 2014; 4(81): 43087–43091.

Zhao M, Liu Y, Hsieh R S, Wang N, Tai W, Joo K I, et al. Clickable Protein Nanocapsules for Targeted Delivery of Recombinant p53 Protein. J Am Chem Soc. 2014; 136(43): 15319–15325. 10.1021/ja508083g PubMed DOI

Arumugam S, Popik V V. Sequential "Click"—"Photo-Click" Cross-Linker for Catalyst-Free Ligation of Azide-Tagged Substrates. J Org Chem. 2014; 79(6): 2702–2708. 10.1021/jo500143v PubMed DOI PMC

Carpenter R D, Hausner S H, Sutcliffe J L. Copper-Free Click for PET: Rapid 1,3-Dipolar Cycloadditions with a Fluorine-18 Cyclooctyne. ACS Med Chem Lett. 2011; 2(12): 885–889. 10.1021/ml200187j PubMed DOI PMC

Hausner S H, Carpenter R D, Bauer N, Sutcliffe J L. Evaluation of an integrin αvβ6-specific peptide labeled with [18F]fluorine by copper-free, strain-promoted click chemistry. Nucl Med Biol. 2013; 40(2): 233–239. 10.1016/j.nucmedbio.2012.10.007 PubMed DOI

Kim H L, Sachin K, Jeong H J, Choi W, Lee H S, Kim D W. F-18 Labeled RGD Probes Based on Bioorthogonal Strain-Promoted Click Reaction for PET Imaging. ACS Med Chem Lett. 2015; 6(4): 402–407. 10.1021/ml500464f PubMed DOI PMC

Lee S B, Kim H L, Jeong H J, Lim S T, Sohn M H, Kim D W. Mesoporous Silica Nanoparticle Pretargeting for PET Imaging Based on a Rapid Bioorthogonal Reaction in a Living Body. Angew Chem Int Ed. 2013; 52(40). PubMed

Lee S, Kang S W, Ryu J H, Na J H, Lee D E, Han S J, et al. Tumor-homing glycol chitosan-based optical/PET dual imaging nanoprobe for cancer diagnosis. Bioconjugate Chem. 2014; 25(3): 601–610. PubMed

Li G, Wang X, Zong S, Wang J, Conti P S, Chen K. MicroPET Imaging of CD13 Expression Using a 64Cu-Labeled Dimeric NGR Peptide Based on Sarcophagine Cage. Mol Pharmaceutics 2014; 11(11): 3938–3946. PubMed

Satpati D, Bauer N, Hausner SH, Sutcliffe JL. Synthesis of [64Cu]DOTA-ADIBON3-Ala-PEG28-A20FMDV2 via copper-free click chemistry for PET imaging of integrin αvβ6. J Radioanal Nucl Chem. 2014; 302(2): 765–771.

Starke F, Walther M, Pietzsch H J. A novel dibenzoazacyclooctyne precursor in regioselective copper-free click chemistry. An innovative 3-step synthesis. ARKIVOC 2010; (11): 350–359.

Zayas J, Annoual M, Das J K, Felty Q, Gonzalez W G, Miksovska J, et al. Strain Promoted Click Chemistry of 2- or 8-Azidopurine and 5-Azidopyrimidine Nucleosides and 8-Azidoadenosine Triphosphate with Cyclooctynes. Application to Living Cell Fluorescent Imaging. Bioconjugate Chem. 2015; 26(8): 1519–1532. PubMed PMC

Zhou Q, Gui J, Pan C M, Albone E, Cheng X, Suh E M, et al. Bioconjugation by Native Chemical Tagging of C-H Bonds. J Am Chem Soc. 2013; 135(35): 12994–12997. 10.1021/ja407739y PubMed DOI PMC

Garland W, Frenzel B, Karg T, Wipke T, Konopelski J, inventors; (Tosk IU, University of California)., assignees. Methotrexate adjuvants to reduce toxicity and methods for using the same. WO patent 2009114325. 20090917.

Wittmann J G, Heinrich D, Gasow K, Frey A, Diederichsen U, Rudolph MG. Structures of the Human Orotidine-5´-Monophosphate Decarboxylase Support a Covalent Mechanism and Provide a Framework for Drug Design. Structure 2008; 16(1): 82–92. 10.1016/j.str.2007.10.020 PubMed DOI

Cheng Z, Elias D R, Kamat N P, Johnston E D, Poloukhtine A, Popik V, et al. Improved Tumor Targeting of Polymer-Based Nanovesicles Using Polymer-Lipid Blends. Bioconjugate Chem. 2011; 22(10): 2021–2029. PubMed PMC

Rajaganesh R, Ravinder P, Subramanian V, Mohan Das T. FACE-selective fluorogenic cycloaddition reaction between coumarin azides and sugar terminal alkynes: an experimental and computational study. Carbohydr Res. 2011; 346(15): 2327–2336. 10.1016/j.carres.2011.07.024 PubMed DOI

Smyslova P. Preparation and reactivity of selected 5 and 5´substituted 5-methyluridines. Palacky University; 2012.

Gaussian 09, Revision D.01, Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A.; Nakatsuji, H.; Caricato, M.; Li, X.; Hratchian, H. P.; Izmaylov, A. F.; Bloino, J.; Zheng, G.; Sonnenberg, J. L.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M.; Heyd, J. J.; Brothers, E.; Kudin, K. N.; Staroverov, V. N.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Rega, N.; Millam, J. M.; Klene, M.; Knox, J. E.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Zakrzewski, V. G.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Dapprich, S.; Daniels, A. D.; Farkas, Ö.; Foresman, J. B.; Ortiz, J. V.; Cioslowski, J.; Fox, D. J. Gaussian, Inc., Wallingford CT, 2009.

Chiacchio U, Corsaro A, Mates J, Merino P, Piperno A, Rescifina A, et al. Isoxazolidine analogs of pseudouridine: a new class of modified nucleosides. Tetrahedron 2003; 59(26): 4733–4738.

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...