Massively Parallel Sequencing Detected a Mutation in the MFN2 Gene Missed by Sanger Sequencing Due to a Primer Mismatch on an SNP Site
Language English Country Great Britain, England Media print-electronic
Document type Case Reports, Journal Article, Research Support, Non-U.S. Gov't
PubMed
26916081
DOI
10.1111/ahg.12151
Knihovny.cz E-resources
- Keywords
- Massively parallel sequencing (MPS), mitofusin 2 (MFN2), polymerase chain reaction (PCR), primer mismatch, single nucleotide polymorphism (SNP),
- MeSH
- Charcot-Marie-Tooth Disease diagnosis genetics MeSH
- DNA Primers MeSH
- GTP Phosphohydrolases genetics MeSH
- Polymorphism, Single Nucleotide * MeSH
- Humans MeSH
- Mitochondrial Proteins genetics MeSH
- Mutation * MeSH
- DNA Mutational Analysis MeSH
- Child, Preschool MeSH
- Pedigree MeSH
- High-Throughput Nucleotide Sequencing MeSH
- Check Tag
- Humans MeSH
- Male MeSH
- Child, Preschool MeSH
- Female MeSH
- Publication type
- Journal Article MeSH
- Case Reports MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- DNA Primers MeSH
- GTP Phosphohydrolases MeSH
- MFN2 protein, human MeSH Browser
- Mitochondrial Proteins MeSH
We describe a patient with early onset severe axonal Charcot-Marie-Tooth disease (CMT2) with dominant inheritance, in whom Sanger sequencing failed to detect a mutation in the mitofusin 2 (MFN2) gene because of a single nucleotide polymorphism (rs2236057) under the PCR primer sequence. The severe early onset phenotype and the family history with severely affected mother (died after delivery) was very suggestive of CMT2A and this suspicion was finally confirmed by a MFN2 mutation. The mutation p.His361Tyr was later detected in the patient by massively parallel sequencing with a gene panel for hereditary neuropathies. According to this information, new primers for amplification and sequencing were designed which bind away from the polymorphic sites of the patient's DNA. Sanger sequencing with these new primers then confirmed the heterozygous mutation in the MFN2 gene in this patient. This case report shows that massively parallel sequencing may in some rare cases be more sensitive than Sanger sequencing and highlights the importance of accurate primer design which requires special attention.
References provided by Crossref.org