Top 10 metrics for life science software good practices

. 2016 ; 5 () : . [epub] 20160816

Status PubMed-not-MEDLINE Jazyk angličtina Země Velká Británie, Anglie Médium electronic-ecollection

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid27635232

Metrics for assessing adoption of good development practices are a useful way to ensure that software is sustainable, reusable and functional. Sustainability means that the software used today will be available - and continue to be improved and supported - in the future. We report here an initial set of metrics that measure good practices in software development. This initiative differs from previously developed efforts in being a community-driven grassroots approach where experts from different organisations propose good software practices that have reasonable potential to be adopted by the communities they represent. We not only focus our efforts on understanding and prioritising good practices, we assess their feasibility for implementation and publish them here.

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Wilson G, Aruliah DA, Brown CT, et al. : Best practices for scientific computing. PubMed DOI PMC

Ison J, Rapacki K, Ménager H, et al. : Tools and data services registry: a community effort to document bioinformatics resources. PubMed DOI PMC

Field D, Sansone S, Delong EF, et al. : Meeting Report: BioSharing at ISMB 2010. PubMed DOI PMC

Ison J, Kalas M, Jonassen I, et al. : EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. PubMed DOI PMC

Hucka M, Bergmann FT, Dräger A, et al. : Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. PubMed DOI PMC

Giannoulatou E, Park SH, Humphreys DT, Ho JW: Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie. PubMed DOI PMC

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Four simple recommendations to encourage best practices in research software

. 2017 ; 6 () : . [epub] 20170613

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