A novel structurally characterized haloacid dehalogenase superfamily phosphatase from Thermococcus thioreducens with diverse substrate specificity
Jazyk angličtina Země Spojené státy americké Médium print-electronic
Typ dokumentu časopisecké články
Grantová podpora
17-24321S
Grantová Agentura České Republiky
GAJU 04-149/2016/P
Jihočeská Univerzita v Českých Budějovicích
PubMed
31373573
DOI
10.1107/s2059798319009586
PII: S2059798319009586
Knihovny.cz E-zdroje
- Klíčová slova
- HAD superfamily, crystal structure, docking, hypothetical phosphatase, phosphatase assay,
- MeSH
- fosfatasy chemie MeSH
- hydrolasy chemie MeSH
- katalytická doména MeSH
- kinetika MeSH
- krystalografie rentgenová metody MeSH
- molekulární modely MeSH
- substrátová specifita MeSH
- Thermococcus enzymologie MeSH
- vazebná místa MeSH
- Publikační typ
- časopisecké články MeSH
- Názvy látek
- 2-haloacid dehalogenase MeSH Prohlížeč
- fosfatasy MeSH
- hydrolasy MeSH
The haloacid dehalogenase (HAD) superfamily is one of the largest known groups of enzymes and the majority of its members catalyze the hydrolysis of phosphoric acid monoesters into a phosphate ion and an alcohol. Despite the fact that sequence similarity between HAD phosphatases is generally very low, the members of the family possess some characteristic features, such as a Rossmann-like fold, HAD signature motifs or the requirement for Mg2+ ion as an obligatory cofactor. This study focuses on a new hypothetical HAD phosphatase from Thermococcus thioreducens. The protein crystallized in space group P21212, with unit-cell parameters a = 66.3, b = 117.0, c = 33.8 Å, and the crystals contained one molecule in the asymmetric unit. The protein structure was determined by X-ray crystallography and was refined to 1.75 Å resolution. The structure revealed a putative active site common to all HAD members. Computational docking into the crystal structure was used to propose substrates of the enzyme. The activity of this thermophilic enzyme towards several of the selected substrates was confirmed at temperatures of 37°C as well as 60°C.
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