Subsistence strategy was the main factor driving population differentiation in the bidirectional corridor of the African Sahel
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't
PubMed
31930493
DOI
10.1002/ajpa.24001
Knihovny.cz E-resources
- Keywords
- African Sahel, Baggarization, Y chromosome, mtDNA, subsistence,
- MeSH
- Genetic Variation * MeSH
- Cultural Evolution MeSH
- Humans MeSH
- Chromosomes, Human, Y * MeSH
- Human Migration MeSH
- Microsatellite Repeats * MeSH
- DNA, Mitochondrial analysis MeSH
- Agriculture classification MeSH
- Life Style * ethnology MeSH
- Check Tag
- Humans MeSH
- Male MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Africa, Central MeSH
- Africa, Eastern MeSH
- Africa, Western MeSH
- Names of Substances
- DNA, Mitochondrial MeSH
OBJECTIVES: The Sahel belt is occupied by populations who use two types of subsistence strategy, nomadic pastoralism and sedentary farming, and who belong to three linguistic families, Niger-Congo, Nilo-Saharan, and Afro-Asiatic. Little is known, however, about the origins of these two populations and their mutual genetic relationships. MATERIALS AND METHODS: We have built a large dataset of mitochondrial DNA sequences and Y chromosomal STR haplotypes of pastoralists and farmers belonging to all three linguistic phyla in the western, central, and eastern parts of the Sahel. We calculated pairwise genetic, geographic, and linguistic distances between populations and analyzed the effects of geography, language, and subsistence on population genetic structure. RESULTS: We found that subsistence mode significantly contributed to the generally low population structure in the Sahel and that language affiliation plays a more important role for pastoralists than for farmers. We also demonstrated that geographic isolation significantly influenced the population structure of sedentary farmers but not of nomadic pastoralists. Finally, we found haplotypes shared between the Fulani and Arabic-speaking Baggara, supporting the theory of Baggarization, which explains the recent adaptation of Arabic-speaking nomads in the Sahel region through contact with autochthonous sub-Saharan populations. CONCLUSIONS: Based on various genetic and archaeological evidence pertaining to the Sahel, we suggest that the idea of a bidirectional Sahelian corridor is valid, but that pastoralists made a more important contribution to its population structure. It is also possible that agropastoralists diverged into farmers and pastoralists in the early stages of formation of the Sahelian gene pool.
Arabic Department Faculty of Arts University of Kordofan Al Ubayyid Sudan
Department of Forensic Genetics Institute of Criminalistics Prague Czech Republic
Department of Zoology Faculty of Science University of South Bohemia České Budějovice Czech Republic
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Bandelt, H.-J., Forster, P., Sykes, B. C., & Richards, M. B. (1995). Mitochondrial portraits of human populations using median networks. Genetics, 141, 743-753.
Bendall, K. E., & Sykes, B. C. (1995). Length heteroplasmy in the first hypervariable segment of the human mtDNA control region. American Journal of Human Genetics, 57, 248-256.
Braukämper, U. (1994). Notes on the origin of Baggara Arab culture with special reference to the Shuwa. In J. Ownes (Ed.), Arabs and Arabic in the Lake Chad region (pp. 13-46). Köln: Rüdiger Köppe Verlag.
Bučková, J., Černý, V., & Novelletto, A. (2013). Multiple and differentiated contributions to the male gene pool of pastoral and farmer populations of the African Sahel. American Journal of Physical Anthropology, 151, 10-21.
Burgarella, C., Cubry, P., Kane, N. A., Varshney, R. K., Mariac, C., Liu, X., … Vigouroux, Y. (2018). A western Sahara centre of domestication inferred from pearl millet genomes. Nature Ecology and Evolution, 2, 1377-1380.
Campbell, L. (2015). Do languages and genes correlate? Language Dynamics and Change, 5, 202-226.
Campbell, L., & Poser, W. J. (2008). Language classification: History and method. Cambridge: Cambridge University Press.
Cazes, M. H. (1990). Endogamy among the Dogon of Boni, Mali. Journal of Biosocial Science, 22, 85-99.
Černý, V., Čížková, M., Poloni, E. S., Al-Meeri, A., & Mulligan, C. J. (2016). Comprehensive view of the population history of Arabia as inferred by mtDNA variation. American Journal of Physical Anthropology, 159, 607-616.
Černý, V., Fernandes, V., Costa, M. D., Hájek, M., Mulligan, C. J., & Pereira, L. (2009). Migration of Chadic speaking pastoralists within Africa based on population structure of Chad Basin and phylogeography of mitochondrial L3f haplogroup. BMC Evolutionary Biology, 9, 63.
Černý, V., Hájek, M., Bromová, M., Čmejla, R., Diallo, I., & Brdička, R. (2006). MtDNA of Fulani nomads and their genetic relationships to neighboring sedentary populations. Human Biology, 78, 9-27.
Černý, V., Hájek, M., Čmejla, R., Brůžek, J., & Brdička, R. (2004). mtDNA sequences of Chadic-speaking populations from northern Cameroon suggest their affinities with eastern Africa. Annals of Human Biology, 31, 554-569.
Černý, V., Kulichová, I., Poloni, E. S., Nunes, J. M., Pereira, L., Mayor, A., & Sanchez-Mazas, A. (2018). Genetic history of the African Sahelian populations. HLA, 91, 153-166.
Černý, V., Pereira, L., Musilová, E., Kujanová, M., Vašíková, A., Blasi, P., … Novelletto, A. (2011). Genetic structure of pastoral and farmer populations in the African Sahel. Molecular Biology and Evolution, 28, 2491-2500.
Černý, V., Salas, A., Hájek, M., Žaloudková, M., & Brdička, R. (2007). A bidirectional corridor in the Sahel-Sudan belt and the distinctive features of the Chad Basin populations: A history revealed by the mitochondrial DNA genome. Annals of Human Genetics, 71, 433-452.
Čížková, M., Hofmanová, Z., Mokhtar, M. G., Janoušek, V., Diallo, I., Munclinger, P., & Černý, V. (2017a). Alu insertion polymorphisms in the African Sahel and the origin of Fulani pastoralists. Annals of Human Biology, 44, 537-545.
Čížková, M., Munclinger, P., Diallo, M. Y., Kulichová, I., Mokhtar, M. G., Dème, A., … Černý, V. (2017b). Genetic Structure of the Western and Eastern African Sahel/Savannah Belt and the Role of Nomadic Pastoralists as Inferred from the Variation of D-Loop Mitochondrial DNA Sequences. Human Biology, 89, 281-302.
Clark, J. D., & Gifford-Gonzalez, D. (2008). Adrar Bous: Archaeology of a Central Saharan Granitic Ring Complex in Niger. Tervuren: Royal Museum for Central Africa.
Creanza, N., Ruhlen, M., Pemberton, T. J., Rosenberg, N. A., Feldman, M. W., & Ramachandran, S. (2015). A comparison of worldwide phonemic and genetic variation in human populations. Proceedings of the National Academy of Sciences, 112, 1265-1272.
Cruciani, F., Trombetta, B., Sellitto, D., Massaia, A., Destro-Bisol, G., Watson, E., … Scozzari, R. (2010a). Human Y chromosome haplogroup R-V88: A paternal genetic record of early mid Holocene trans-Saharan connections and the spread of Chadic languages. European Journal of Human Genetics, 18, 800-807.
Cruciani, F., Trombetta, B., Sellitto, D., Massaia, A., Destro-Bisol, G., Watson, E., … Scozzari, R. (2010b). Reply to Lancaster. European Journal of Human Genetics, 18, 1186-1187.
Cunnison, I. (1966). Baggara Arabs: Power and Lineage in a Sudanese Nomad Tribe. Oxford: Oxford University Press.
di Lernia, S., Tafuri, M. A., Gallinaro, M., Alhaique, F., Balasse, M., Cavorsi, L., … Zerboni, A. (2013). Inside the "African cattle complex": Animal burials in the holocene central Sahara. PLoS One, 8(2), e56879.
Diniz-Filho, J. A., Soares, T. N., Lima, J. S., Dobrovolski, R., Landeiro, V. L., de Campos Telles, M. P., … Bini, L. M. (2013). Mantel test in population genetics. Genetics and Molecular Biology, 36, 475-485.
Dunne, J., Evershed, R. P., Salque, M., Cramp, L., Bruni, S., Ryan, K., … di Lernia, S. (2012). First dairying in green Saharan Africa in the fifth millennium BC. Nature, 486, 390-394.
Excoffier, L., & Lischer, H. E. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources, 10, 564-567.
Galego Llorente, M., Jones, E. R., Eriksson, A., Siska, V., Arthur, K. W., Arthur, J. W., … Manica, A. (2015). Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent. Science, 350, 820-822.
Goslee, S. C. (2010). Correlation analysis of dissimilarity matrices. Plant Ecology, 206, 279-286.
Goslee, S. C., & Urban, D. L. (2007). The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software, 22, 1-19.
Greenberg, J. H. (1963). The languages of Africa. Bloomington: Indiana University.
Guillot, G., & Rousset, F. (2013). Dismantling the Mantel tests. Methods in Ecology and Evolution, 4, 336-344.
Güldemann, T. (2018). The languages and linguistics of Africa. Berlin: Mouton de Gruyter.
Haber, M., Mezzavilla, M., Bergstrom, A., Prado-Martinez, J., Hallast, P., Saif-Ali, R., … Tyler-Smith, C. (2016). Chad genetic diversity reveals an African history marked by multiple Holocene Eurasian Migrations. American Journal of Human Genetics, 99, 1316-1324.
Hampshire, K. R., & Smith, M. T. (2001). Consanguineous marriage among the Fulani. Human Biology, 73, 597-603.
Holman, E. W. (2011). Programs for calculating ASJP distance matrices (version 2.1). https://asjp.clld.org/software.
Homewood, K. (2008). Ecology of African pastoralist societies. Oxford: James Currey.
Jesse, F., Keding, B., Lenssen-Erz, T., & Pöllath, N. (2013). ‘I hope your cattle are well’ archaeological evidence for early cattle-centred behaviour in the Eastern Sahara of Sudan and Chad. In M. Bollig, M. Schnegg, & H.-P. Wotzka (Eds.), Pastoralism in Africa: Past, present and future (pp. 66-103). New York: Berghan Books.
Kleisner, K., Pokorný, Š., Čížková, M., Froment, A., & Černý, V. (2019). Nomadic pastoralists and sedentary farmers of the Sahel/Savannah belt of Africa in the light of geometric morphometrics based on facial portraits. American Journal of Physical Anthropology, 169(4), 632-645.
Kloss-Brandstätter, A., Pacher, D., Schonherr, S., Weissensteiner, H., Binna, R., Specht, G., & Kronenberg, F. (2011). HaploGrep: A fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups. Human Mutations, 32, 25-32.
Kulichová, I., Fernandes, V., Deme, A., Nováčková, J., Stenzl, V., Novelletto, A., … Černý, V. (2017). Internal diversification of non-Sub-Saharan haplogroups in Sahelian populations and the spread of pastoralism beyond the Sahara. American Journal of Physical Anthropology, 164, 424-434.
Lancaster, A. (2010). Chadic languages and Y haplogroups. European Journal of Human Genetics, 18, 1185 author reply 1186-7.
Levy, T. E., & Holl, A. F. C. (2002). Migrations, ethnogenesis and settlement dynamics: Israelites in Iron Age Canaan and Shuwa-Arabs in the Chad Basin. Journal of Anthropological Archaeology, 21, 83-118.
Linseele, V. (2013). From the first stock keepers to specialised pastoralists in the West African Savannah. In M. Bollig, M. Schnegg, & H.-P. Wotzka (Eds.), Pastoralism in Africa: Past, present and future (pp. 145-170). New York: Berghan Books.
Maley, J., & Vernet, R. (2015). Populations and climatic evolution in North Tropical Africa from the end of the Neolithic to the dawn of the modern era. African Archaeological Review, 32, 179-232.
Manning, K., & Timpson, A. (2014). The demographic response to Holocene climate change in the Sahara. Quaternary Science Reviews, 101, 28-35.
Marshall, F., & Hildebrand, E. (2002). Cattle before crops: The beginnings of food production in Africa. Journal of World Prehistory, 16, 99-143.
Mercuri, A. M., Fornaciari, R., Gallinaro, M., Vanin, S., & di Lernia, S. (2018). Plant behaviour from human imprints and the cultivation of wild cereals in Holocene Sahara. Nature Plants, 4, 71-81.
Neumann, K. (2003). The late emergence of agriculture in sub-Saharan Africa: Archaeobotanical evidence and ecological considerations. In K. Neumann, A. Butler, & S. Kahlheber (Eds.), Food, fuel and fields. Progress in African archaeobotany (pp. 71-92). Heinrich-Barth-Institute: Koln.
Neumann, K. (2005). The romance of farming: Plant cultivation and domestication in Africa. In A. B. Stahl (Ed.), African archaeology. A critical introduction (pp. 249-275). Malden: Blackwell Publishing Ltd.
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P., McGlinn, D., … Wagner, H. (2018). vegan: Community ecology package. R package version 2.5-3.
Owens, J. (1994). Arabs and Arabic in the Lake Chad region. Köln: Rüdiger Köppe Verlag.
Ozainne, S., Lespez, L., Garnier, A., Ballouche, A., Neumann, K., Pays, O., & Huysecom, E. (2014). A question of timing: Spatio-temporal structure and mechanisms of early agriculture expansion in West Africa. Journal of Archaeological Science, 50, 359-368.
Pickrell, J. K., Patterson, N., Loh, P. R., Lipson, M., Berger, B., Stoneking, M., … Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences, 111, 2632-2637.
Podgorná, E., Soares, P., Pereira, L., & Černý, V. (2013). The genetic impact of the Lake Chad basin population in North Africa as documented by mitochondrial diversity and internal variation of the L3e5 haplogroup. Annals of Human Genetics, 77, 513-523.
Poloni, E. S., Naciri, Y., Bucho, R., Niba, R., Kervaire, B., Excoffier, L., … Sanchez-Mazas, A. (2009). Genetic evidence for complexity in ethnic differentiation and history in East Africa. Annals of Human Genetics, 73, 582-600.
Priehodová, E., Austerlitz, F., Čížková, M., Mokhtar, M. G., Poloni, E. S., & Černý, V. (2017). The historical spread of Arabian Pastoralists to the eastern African Sahel evidenced by the lactase persistence −13,915*G allele and mitochondrial DNA. American Journal of Human Biology, 29(3), e22950.
R Core Team. (2019). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
Reynolds, J., Weir, B. S., & Cockerham, C. C. (1983). Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics, 105, 767-779.
Schlebusch, C. M., Skoglund, P., Sjodin, P., Gattepaille, L. M., Hernandez, D., Jay, F., … Jakobsson, M. (2012). Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science, 338, 374-379.
Sereno, P. C., Garcea, E. A., Jousse, H., Stojanowski, C. M., Saliege, J. F., Maga, A., … Stivers, J. P. (2008). Lakeside cemeteries in the Sahara: 5000 years of holocene population and environmental change. PLoS One, 3(8), e2995.
Shriner, D., & Rotimi, C. N. (2018). Genetic history of Chad. American Journal of Physical Anthropology, 167(4), 804-812.
Simons, G. F., & Fennig, C. D. (Eds.). (2017). Ethnologue: Languages of the world (20th ed.). Dallas, TX: SIL International.
Slowikowski, K. (2018). ggrepel: Automatically position non-overlapping text labels with ‘ggplot2’. R package version 0.8.0. https://CRAN.R-project.org/package=ggrepel.
Spedini, G., Destro-Bisol, G., Mondovi, S., Kaptue, L., Taglioli, L., & Paoli, G. (1999). The peopling of sub-Saharan Africa: The case study of Cameroon. American Journal of Physical Anthropology, 110, 143-162.
Tishkoff, S. A., Reed, F. A., Friedlaender, F. R., Ehret, C., Ranciaro, A., Froment, A., … Williams, S. M. (2009). The genetic structure and history of Africans and African Americans. Science, 324, 1035-1044.
Triska, P., Soares, P., Patin, E., Fernandes, V., Cerny, V., & Pereira, L. (2015). Extensive admixture and selective pressure across the Sahel Belt. Genome Biology and Evolution, 7, 3484-3495.
van Oven, M., & Kayser, M. (2009). Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Human Mutations, 30, 386-394.
Vicente, M., Priehodová, E., Diallo, I., Podgorná, E., Poloni, E. S., Černý, V., & Schlebusch, C. (2019). M. Population history and genetic adaptation of the Fulani nomads: Inferences from genome-wide data and the lactase persistence trait. BMC Genomics, 20(1), 915. https://doi.org/10.1101/650986
Wichmann, S., Holman, E. W., & Brown, C. H. (2018). The ASJP database (version 18). https://asjp.clld.org/.
Wickham, H. (2016). ggplot2: Elegant graphics for data analysis. New York: Springer-Verlag.
Winchell, F., Stevens, C. J., Murphy, C., Champion, L., & Fuller, D. Q. (2017). Evidence for Sorghum Domestication in Fourth Millenium BC Eastern Sudan: Spikelet morphology from ceramic impressions of the Butana Group. Current Anthropology, 58, 673-683.
Zeltner, J. C. (2002). Histoire des Arabes sur les rives du lac Tchad. Paris: Karthala.
Population history and admixture of the Fulani people from the Sahel
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