Simple, but Not Too Simple: Modeling the Dynamics of DNA and RNA Buckling
Language English Country United States Media print-electronic
Document type Journal Article, Research Support, Non-U.S. Gov't, Comment
PubMed
32171419
PubMed Central
PMC7136353
DOI
10.1016/j.bpj.2020.02.021
PII: S0006-3495(20)30200-9
Knihovny.cz E-resources
- MeSH
- DNA * genetics MeSH
- RNA * genetics MeSH
- Publication type
- Journal Article MeSH
- Comment MeSH
- Research Support, Non-U.S. Gov't MeSH
- Names of Substances
- DNA * MeSH
- RNA * MeSH
See more in PubMed
Landau L.D., Pitaevskii L.P., Lifshitz E.M. Butterworth-Heinemann; Oxford, UK: 1986. Theory of Elasticity.
Timoshenko S.P., Gere J.M. McGraw-Hill; New York: 1963. Theory of Elastic Stability.
Lipfert J., Skinner G.M., Dekker N.H. Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA. Proc. Natl. Acad. Sci. USA. 2014;111:15408–15413. PubMed PMC
Ott K., Martini L., Gerland U. Dynamics of the buckling transition in double-stranded DNA and RNA. Biophys. J. 2020;118:1690–1701. PubMed PMC
Brutzer H., Luzzietti N., Seidel R. Energetics at the DNA supercoiling transition. Biophys. J. 2010;98:1267–1276. PubMed PMC
Walker P.U., Vanderlinden W., Lipfert J. Dynamics and energy landscape of DNA plectoneme nucleation. Phys. Rev. E. 2018;98:042412.
Daniels B.C., Sethna J.P. Nucleation at the DNA supercoiling transition. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 2011;83:041924. PubMed
Jiang S., Liang Z., Huang J. A fast algorithm for Brownian dynamics simulations with hydrodynamic interactions. Math. Comput. 2013;82:1631–1645.
