Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera

. 2020 Jul 01 ; 12 (7) : 1099-1188.

Jazyk angličtina Země Anglie, Velká Británie Médium print

Typ dokumentu srovnávací studie, časopisecké články, Research Support, N.I.H., Extramural, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.

Perzistentní odkaz   https://www.medvik.cz/link/pmid32442304

Grantová podpora
U54 HG003273 NHGRI NIH HHS - United States

The tremendous diversity of Hymenoptera is commonly attributed to the evolution of parasitoidism in the last common ancestor of parasitoid sawflies (Orussidae) and wasp-waisted Hymenoptera (Apocrita). However, Apocrita and Orussidae differ dramatically in their species richness, indicating that the diversification of Apocrita was promoted by additional traits. These traits have remained elusive due to a paucity of sawfly genome sequences, in particular those of parasitoid sawflies. Here, we present comparative analyses of draft genomes of the primarily phytophagous sawfly Athalia rosae and the parasitoid sawfly Orussus abietinus. Our analyses revealed that the ancestral hymenopteran genome exhibited traits that were previously considered unique to eusocial Apocrita (e.g., low transposable element content and activity) and a wider gene repertoire than previously thought (e.g., genes for CO2 detection). Moreover, we discovered that Apocrita evolved a significantly larger array of odorant receptors than sawflies, which could be relevant to the remarkable diversification of Apocrita by enabling efficient detection and reliable identification of hosts.

A N Belozersky Institute of Physico Chemical Biology Moscow State University Russia

Arthropoda Department Center for Taxonomy and Evolutionary Research Zoologisches Forschungsmuseum Alexander Koenig Bonn Germany

B CUBE Center for Molecular Bioengineering Technische Universität Dresden Germany

Berkeley Bioinformatics Open source Projects Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Berkeley California

Biochemistry Department University of Otago Dunedin New Zealand

Center for Bioinformatics Tübingen University of Tübingen Germany

Center for Molecular Biodiversity Research Zoologisches Forschungsmuseum Alexander Koenig Bonn Germany

Center for Translational Biodiversity Genomics Frankfurt Germany

Center of Life Sciences Skolkovo Institute of Science and Technology Russia

Computational Biology Group Leibniz Institute on Aging Fritz Lipmann Institute Jena Germany

Department of Biological Sciences Oakland University Rochester

Department of Biological Sciences University of Cincinnati

Department of Biological Sciences Wayne State University Detroit

Department of Biology Georgia Southern University Statesboro

Department of Biology University of Copenhagen Denmark

Department of Biology University of Rochester

Department of Ecology and Evolution University of Lausanne Switzerland

Department of Entomology Purdue University West Lafayette

Department of Environmental Science Policy and Management College of Natural Resources University of California Berkeley

Department of Evolutionary Biology and Ecology Institute of Biology 1 Albert Ludwig University Freiburg Germany

Department of Evolutionary Neuroethology Max Planck Institute for Chemical Ecology Jena Germany

Department of Genetic Medicine and Development University of Geneva Medical School Switzerland

Department of Neuroscience The Scripps Research Institute Jupiter Florida

Department of Psychiatry and Behavioral Neuroscience University of Chicago

Division of Evolutionary Biology Faculty of Biology Ludwig Maximilians Universität München Planegg Martinsried Germany

Division of Medical Zoology Department of Infection and Immunity Jichi Medical University Yakushiji Shimotsuke Japan

Faculty of Forestry and Wood Sciences Czech University of Life Sciences Prague Praha 6 Suchdol Czech Republic

Genomics Aotearoa and Biochemistry Department University of Otago Dunedin New Zealand

Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan

Groningen Institute for Evolutionary Life Sciences University of Groningen The Netherlands

Human Genome Sequencing Center Department of Human and Molecular Genetics Baylor College of Medicine Houston Texas

INRAE CNRS IRD UPEC Univ P7 Institute of Ecology and Environmental Sciences of Paris Sorbonne Université Paris France

INRAE CNRS IRD UPEC Univ P7 Institute of Ecology and Environmental Sciences of Paris Sorbonne Université Versailles France

INSA Lyon INRAE BF2I UMR0203 Université de Lyon Villeurbanne France

Insect Genome Research and Engineering Unit Division of Applied Genetics Institute of Agrobiological Sciences NARO Owashi Tsukuba Japan

Institute for Evolution and Biodiversity University of Münster Germany

Institute for Insect Biotechnology University of Gießen Germany

Institute of Evolutionary Biology and Ecology Zoology and Evolutionary Biology University of Bonn Germany

Institute of Molecular Biology and Biotechnology Foundation for Research and Technology Hellas Heraklion Crete Greece

Lead Contact

Max Planck Institute of Immunobiology and Epigenetics Freiburg Germany

School of Biology Faculty of Biological Sciences University of Leeds United Kingdom

School of Life Sciences College of Liberal Arts and Sciences Arizona State University

Swiss Institute of Bioinformatics Geneva Switzerland

Swiss Institute of Bioinformatics Lausanne Switzerland

Transgenic Silkworm Research Unit Division of Biotechnology Institute of Agrobiological Sciences National Agriculture and Food Research Organization Owashi Tsukuba Japan

USDA Agricultural Research Service Center for Grain and Animal Health Research Manhattan Kansas

USDA ARS National Agricultural Library Beltsville Maryland

Zoological Institute University of Hamburg Germany

Zoology Department University of Cambridge United Kingdom

Zobrazit více v PubMed

Abdalsamee MK, Müller C.. 2012. Effects of indole glucosinolates on performance and sequestration by the sawfly Athalia rosae and consequences of feeding on the plant defense system. J Chem Ecol. 38(11):1366–1375. PubMed

Abe M. 1988. A biosystematic study of the genus Athalia Leach of Japan (Hymenoptera: tenthredinidae). Esakia 26:91–131.

Aguiar AP, et al.2013. Order Hymenoptera. Zootaxa 3703(1):51–62.

Ahnlund H, Ronquist F.. 2002. Den röda parasitväxtstekelns (Orussus abietinus) biologi och förekomst i Norden. Entomol Tidskr. 122:1–10.

Alexa A, Rahnenfuhrer J.. 2016. topGO: Enrichment analysis for gene ontology. R package version 2.38.1.

Anisimova M, Gascuel O.. 2006. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst Biol. 55(4):539–552. PubMed

Ardila-Garcia AM, Umphrey GJ, Gregory TR.. 2010. An expansion of the genome size dataset for the insect order Hymenoptera, with a first test of parasitism and eusociality as possible constraints. Insect Mol Biol. 19(3):337–346. PubMed

Bailly-Bechet M, Haudry A, Lerat E.. 2014. “One code to find them all”: a perl tool to conveniently parse RepeatMasker output files. Mob DNA. 5(1):13.

Bao R, Friedrich M.. 2009. Molecular evolution of the Drosophila retinome: exceptional gene gain in the higher Diptera. Mol Biol Evol. 26(6):1273–1287. PubMed

Barribeau SM, et al.2015. A depauperate immune repertoire precedes evolution of sociality in bees. Genome Biol. 16(1):83. PubMed PMC

Beres BL, Dosdall LM, Weaver DK, Cárcamo HA, Spaner DM.. 2011. Biology and integrated management of wheat stem sawfly and the need for continuing research. Can Entomol. 143(2):105–125.

Berriman M, et al.2009. The genome of the blood fluke Schistosoma mansoni. Nature 460(7253):352–358. PubMed PMC

Bonasio R, et al.2010. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science 329(5995):1068–1071. PubMed PMC

Branstetter MG, et al.2018. Genomes of the Hymenoptera. Curr Opin Insect Sci. 25:65–75. PubMed PMC

Brucker RM, Funkhouser LJ, Setia S, Pauly R, Bordenstein SR.. 2012. Insect Innate Immunity Database (IIID): an annotation tool for identifying immune genes in insect genomes. PLoS One 7(9):e45125. PubMed PMC

Buttstedt A, Moritz RFA, Erler S.. 2014. Origin and function of the major royal jelly proteins of the honeybee (Apis mellifera) as members of the yellow gene family. Biol Rev. 89(2):255–269. PubMed

Camacho C, et al.2009. BLAST+: architecture and applications. BMC Bioinformatics 10(1):421. PubMed PMC

Cantarel BL, et al.2007. MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Res. 18(1):188–196. PubMed PMC

Capella-Gutierrez S, Silla-Martinez JM, Gabaldon T.. 2009. trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinformatics 25(15):1972–1973. PubMed PMC

Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17(4):540–552. PubMed

Chipman AD, et al.2014. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. PLoS Biol. 12(11):e1002005. PubMed PMC

Ciccarelli FD. 2005. Complex genomic rearrangements lead to novel primate gene function. Genome Res. 15(3):343–351. PubMed PMC

Claudel-Renard C, Chevalet C, Faraut T, Kahn D.. 2003. Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res. 31(22):6633–6639. PubMed PMC

Cristino AS, et al.2010. Organization, evolution and transcriptional profile of hexamerin genes of the parasitic wasp Nasonia vitripennis (Hymenoptera: Pteromalidae). Insect Mol Biol. 19:137–146. PubMed

Dehal P. 2002. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 298(5601):2157–2167. PubMed

Desjardins CA, et al.2013. Genomics of Loa loa, a Wolbachia-free filarial parasite of humans. Nat Genet. 45(5):495–501. PubMed PMC

Desjardins CA, Perfectti F, Bartos JD, Enders LS, Werren JH.. 2010. The genetic basis of interspecies host preference differences in the model parasitoid Nasonia. Heredity 104(3):270–277. PubMed PMC

Drapeau MD, Albert S, Kucharski R, Prusko C, Maleszka R.. 2006. Evolution of the Yellow/Major Royal Jelly protein family and the emergence of social behavior in honey bees. Genome Res. 16(11):1385–1394. PubMed PMC

Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797. PubMed PMC

Engström PG, Sui SJH, Drivenes Ø, Becker TS, Lenhard B.. 2007. Genomic regulatory blocks underlie extensive microsynteny conservation in insects. Genome Res. 17(12):1898–1908. PubMed PMC

Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S.. 2013. The i5K initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment. J Hered. 104:595–600. PubMed PMC

Evans JD, et al.2006. Immune pathways and defence mechanisms in honey bees Apis mellifera. Insect Mol Biol. 15(5):645–656. PubMed PMC

Falcon S, Gentleman R.. 2007. Using GOstats to test gene lists for GO term association. Bioinformatics 23(2):257–258. PubMed

Felsenstein J. 1985. Phylogenies and the comparative method. Am Nat. 125(1):1–15.

Finn RD, et al.2016. The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44(D1):D279–D285. PubMed PMC

Gadau J, et al.2012. The genomic impact of 100 million years of social evolution in seven ant species. Trends Genet. 28(1):14–21. PubMed PMC

Gnerre S, et al.2011. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc Natl Acad Sci U S A. 108(4):1513–1518. PubMed PMC

Götz S, et al.2008. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36(10):3420–3435. PubMed PMC

Grabherr MG, et al.2011. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol. 29(7):644–652. PubMed PMC

Grbić M, et al.2011. The genome of Tetranychus urticae reveals herbivorous pest adaptations. Nature 479(7374):487–492. PubMed PMC

Gregory TR. 2018. Animal genome size database. Available from: http://www.genomesize.com. Accessed December 2019.

Grimaldi DA, Engel MS.. 2005. Evolution of the insects. Cambridge: Cambridge University Press.

Guindon S, et al.2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 59(3):307–321. PubMed

Hagner-Holler S, Pick C, Girgenrath S, Marden JH, Burmester T.. 2007. Diversity of stonefly hexamerins and implication for the evolution of insect storage proteins. Insect Biochem Mol Biol. 37(10):1064–1074. PubMed

Han MV, Thomas GWC, Lugo-Martinez J, Hahn MW.. 2013. Estimating gene gain and loss rates in the presence of error in genome assembly and annotation using CAFE 3. Mol Biol Evol. 30(8):1987–1997. PubMed

Hanes J, Šimuth J.. 1992. Identification and partial characterization of the major royal jelly protein of the honey bee (Apis mellifera L.). J Apic Res. 31(1):22–26.

Hanrahan SJ, Johnston JS.. 2011. New genome size estimates of 134 species of arthropods. Chromosome Res. 19(6):809–823. PubMed

Henze MJ, Oakley TH.. 2015. The dynamic evolutionary history of pancrustacean eyes and opsins. Integr Comp Biol. 55(5):830–842. PubMed

Hu X, Leming MT, Whaley MA, O’Tousa JE.. 2014. Rhodopsin coexpression in UV photoreceptors of Aedes aegypti and Anopheles gambiae mosquitoes. J Exp Biol. 217(6):1003–1008. PubMed PMC

Huerta-Cepas J, Serra F, Bork P.. 2016. ETE 3: reconstruction, analysis, and visualization of phylogenomic data. Mol Biol Evol. 33(6):1635–1638. PubMed PMC

International Human Genome Sequencing Consortium, et al.2001. Initial sequencing and analysis of the human genome. Nature 409:860–921. PubMed

Jervis MA, Ellers J, Harvey JA.. 2008. Resource acquisition, allocation, and utilization in parasitoid reproductive strategies. Annu Rev Entomol. 53(1):361–385. PubMed

Jervis MA, Kidd NAC, Fitton MG, Huddleston T, Dawah HA.. 1993. Flower-visiting by hymenopteran parasitoids. J Nat Hist. 27(1):67–105.

Jones WD, Cayirlioglu P, Kadow IG, Vosshall LB.. 2007. Two chemosensory receptors together mediate carbon dioxide detection in Drosophila. Nature 445(7123):86–90. PubMed

Jurka J, et al.2005. Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110(1–4):462–467. PubMed

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS.. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nat Methods. 14(6):587–589. PubMed PMC

Kapheim KM, et al.2015. Genomic signatures of evolutionary transitions from solitary to group living. Science 348(6239):1139–1143. PubMed PMC

Karp PD, et al.2016. Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Brief Bioinform. 17(5):877–890. PubMed PMC

Katoh K, Standley DM.. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol. 30(4):772–780. PubMed PMC

Kawecki TJ. 1998. Red queen meets Santa Rosalia: arms races and the evolution of host specialization in organisms with parasitic lifestyles. Am Nat. 152(4):635–651. PubMed

Kent CF, Minaei S, Harpur BA, Zayed A.. 2012. Recombination is associated with the evolution of genome structure and worker behavior in honey bees. Proc Natl Acad Sci U S A. 109(44):18012–18017. PubMed PMC

Kent WJ. 2002. BLAT—the BLAST-like alignment tool. Genome Res. 12(4):656–664. PubMed PMC

Kim D, et al.2013. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14(4):R36. PubMed PMC

Kim S, et al.2016. Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly. Genome Biol. 17(1):211. PubMed PMC

Kocher SD, et al.2013. The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes. Genome Biol. 14(12):R142. PubMed PMC

Korf I. 2004. Gene finding in novel genomes. BMC Bioinformatics 5(1):59. PubMed PMC

Kupke J, Spaethe J, Mueller MJ, Rössler W, Albert Š.. 2012. Molecular and biochemical characterization of the major royal jelly protein in bumblebees suggest a non-nutritive function. Insect Biochem Mol Biol. 42(9):647–654. PubMed

Kwon JY, Dahanukar A, Weiss LA, Carlson JR.. 2007. The molecular basis of CO2 reception in Drosophila. Proc Natl Acad Sci U S A. 104(9):3574–3578. PubMed PMC

Larkin MA, et al.2007. Clustal W and Clustal X version 2.0. Bioinformatics 23(21):2947–2948. PubMed

Lavezzo E, Falda M, Fontana P, Bianco L, Toppo S.. 2016. Enhancing protein function prediction with taxonomic constraints—the Argot2.5 web server. Methods 93:15–23. PubMed

Lee E, et al.2013. Web Apollo: a web-based genomic annotation editing platform. Genome Biol. 14(8):R93. PubMed PMC

Lees JG, Dawson NL, Sillitoe I, Orengo CA.. 2016. Functional innovation from changes in protein domains and their combinations. Curr Opin Struct Biol. 38:44–52. PubMed

Lefort V, Longueville J-E, Gascuel O.. 2017. SMS: smart model selection in PhyML. Mol Biol Evol. 34(9):2422–2424. PubMed PMC

Marçais G, Kingsford C.. 2011. A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics 27(6):764–770. PubMed PMC

Martins JR, Nunes FMF, Cristino AS, Simões ZLP, Bitondi M.. 2010. The four hexamerin genes in the honey bee: structure, molecular evolution and function deduced from expression patterns in queens, workers and drones. BMC Mol Biol. 11(1):23. PubMed PMC

Mattson WJ. 1980. Herbivory in relation to plant nitrogen content. Annu Rev Ecol Syst. 11(1):119–161.

Mine S, Sumitani M, Aoki F, Hatakeyama M, Suzuki MG.. 2017. Identification and functional characterization of the sex-determining gene doublesex in the sawfly, Athalia rosae (Hymenoptera: Tenthredinidae). Appl Entomol Zool. 52(3):497–509. PubMed PMC

Mitchell AL, et al.2019. InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Res. 47(D1):D351–D360. PubMed PMC

Moore AD, Bornberg-Bauer E.. 2012. The dynamics and evolutionary potential of domain loss and emergence. Mol Biol Evol. 29(2):787–796. PubMed PMC

Moreno M, Giralt E.. 2015. Three valuable peptides from bee and wasp venoms for therapeutic and biotechnological use: melittin, apamin and mastoparan. Toxins 7(4):1126–1150. PubMed PMC

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M.. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35(Web Server):W182–W185. PubMed PMC

Mouse Genome Sequencing Consortium, et al.2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420:520–562. PubMed

Mrinalini, Werren JH.. 2017. Parasitoid wasps and their venoms In: Gopalakrishnakone P, Malhotra A, editors. Evolution of venomous animals and their toxins. Dordrecht: Springer; p. 187–212.

Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ.. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 32(1):268–274. PubMed PMC

Ni JD, Baik LS, Holmes TC, Montell C.. 2017. A rhodopsin in the brain functions in circadian photoentrainment in Drosophila. Nature 545(7654):340–344. PubMed PMC

Niehuis O, et al.2010. Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia. PLoS One 5(1):e8597. PubMed PMC

Nygaard S, et al.2011. The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res. 21(8):1339–1348. PubMed PMC

Paradis E, Claude J, Strimmer K.. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20(2):289–290. PubMed

Parra G, Bradnam K, Korf I.. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23(9):1061–1067. PubMed

Pask GM, et al.2017. Specialized odorant receptors in social insects that detect cuticular hydrocarbon cues and candidate pheromones. Nat Commun. 8(1):297. PubMed PMC

Peitsch D, et al.1992. The spectral input systems of hymenopteran insects and their receptor-based colour vision. J Comp Physiol A. 170(1):23–40. PubMed

Peters RS. 2010. Host range and offspring quantities in natural populations of Nasonia vitripennis (Walker, 1836) (Hymenoptera: Chalcidoidea: Pteromalidae). J Hymenopt Res. 19:128–138.

Peters RS, et al.2014. The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data. BMC Evol Biol. 14(1):52. PubMed PMC

Peters RS, et al.2017. Evolutionary history of the Hymenoptera. Curr Biol. 27(7):1013–1018. PubMed

Petersen M, et al.2019. Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. BMC Evol Biol. 19(1):11. PubMed PMC

Poelchau M, et al.2015. The i5k Workspace@NAL-enabling genomic data access, visualization and curation of arthropod genomes. Nucleic Acids Res. 43(D1):D714–D719. PubMed PMC

Pruitt KD, Tatusova T, Brown GR, Maglott DR.. 2012. NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40(D1):D130–D135. PubMed PMC

Pultz MA, Leaf DS.. 2003. The jewel wasp Nasonia: querying the genome with haplo-diploid genetics. Genesis 35(3):185–191. PubMed

Putnam NH, et al.2007. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317(5834):86–94. PubMed

Putnam NH, et al.2008. The amphioxus genome and the evolution of the chordate karyotype. Nature 453(7198):1064–1071. PubMed

Quicke D. 1997. Parasitic wasps. London: Chapman & Hall.

R Core Team. 2017. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Available from: https://www.R-project.org/.

Rappoport N, Linial M.. 2015. Trends in genome dynamics among major orders of insects revealed through variations in protein families. BMC Genomics 16(1):583. PubMed PMC

Richards S, et al.2008. The genome of the model beetle and pest Tribolium castaneum. Nature 452(7190):949–955. PubMed

Robertson HM, et al.2018. Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors. Genome Biol Evol. 10(11):2997–3011. PubMed PMC

Robertson HM, Gadau J, Wanner KW.. 2010. The insect chemoreceptor superfamily of the parasitoid jewel wasp Nasonia vitripennis. Insect Mol Biol. 19:121–136. PubMed

Robertson HM, Wanner KW.. 2006. The chemoreceptor superfamily in the honey bee, Apis mellifera: expansion of the odorant, but not gustatory, receptor family. Genome Res. 16(11):1395–1403. PubMed PMC

Robinson GE, et al.2011. Creating a buzz about insect genomes. Science 331(6023):1386–1386. PubMed

Sackton TB, Werren JH, Clark AG.. 2013. Characterizing the infection-induced transcriptome of Nasonia vitripennis reveals a preponderance of taxonomically-restricted immune genes. PLoS One 8(12):e83984. PubMed PMC

Sadd BM, et al.2015. The genomes of two key bumblebee species with primitive eusocial organization. Genome Biol. 16(1):76. PubMed PMC

Sanchez R, et al.2011. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Suppl):W470–W474. PubMed PMC

Sáringer G. 1974. Problems with Athalia rosae L. (Hym., Tenthredinidae) in Hungary. In: Proceed 4. Giessen: Intern Rapskongress. p. 575–578.

Savard J, et al.2006. Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of holometabolous insects. Genome Res. 16(11):1334–1338. PubMed PMC

Schmid-Hempel P. 2011. Evolutionary parasitology: the integrated study of infections,immunology, ecology, and genetics. Oxford: Oxford University Press.

Sekine K, Furusawa T, Hatakeyama M.. 2015. The boule gene is essential for spermatogenesis of haploid insect male. Dev Biol. 399(1):154–163. PubMed

Senthilan PR, Helfrich-Förster C.. 2016. Rhodopsin 7–the unusual rhodopsin in Drosophila. PeerJ 4:e2427. PubMed PMC

Sharkey MJ. 2007. Phylogeny and classification of Hymenoptera. Zootaxa 1668(1):521–548.

Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Syst Biol. 51(3):492–508. PubMed

Simakov O, et al.2013. Insights into bilaterian evolution from three spiralian genomes. Nature 493(7433):526–531. PubMed PMC

Simão FA, Waterhouse RM, Ioannidis P, Kriventseva EV, Zdobnov EM.. 2015. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 31(19):3210–3212. PubMed

Slansky FJ. 1986. Nutritional ecology of endoparasitic insects and their hosts: an overview. J Insect Physiol. 32(4):255–261.

Slater GSC, Birney E.. 2005. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 6(1):31. PubMed PMC

Small KS, Brudno M, Hill MM, Sidow A.. 2007. A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome. Genome Biol. 8(3):R41. PubMed PMC

Smit A, Hubley R.. 2015. RepeatModeler Open-1.0. Available from: http://wwww.repeatmasker.org. Accessed December 18, 2016.

Smit A, Hubley R, Green P.. 2015. RepeatMasker Open-4.0. Available from: http://www.repeatmasker.org. Accessed December 18, 2016.

Smith CD, Zimin A, et al.2011. Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A. 108(14):5673–5678. PubMed PMC

Smith CR, Smith CD, et al.2011. Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A. 108(14):5667–5672. PubMed PMC

Snodgrass RE. 1925. Anatomy and physiology of the honeybee. New York: Mcgeaw-Hallbook Company.

Sodergren E, et al.2006. The genome of the sea urchin Strongylocentrotus purpuratus. Science 314(5801):941–952. PubMed PMC

Srivastava M, et al.2008. The Trichoplax genome and the nature of placozoans. Nature 454(7207):955–960. PubMed

Srivastava M, et al.2010. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466(7307):720–726. PubMed PMC

Standage DS, et al.2016. Genome, transcriptome and methylome sequencing of a primitively eusocial wasp reveal a greatly reduced DNA methylation system in a social insect. Mol Ecol. 25(8):1769–1784. PubMed

Stanke M, Diekhans M, Baertsch R, Haussler D.. 2008. Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics 24(5):637–644. PubMed

Steidle JLM, Schöller M.. 1997. Olfactory host location and learning in the granary weevil parasitoid Lariophagus distinguendus (Hymenoptera: Pteromalidae). J Insect Behav. 10(3):331–342.

Strimmer K, von Haeseler A.. 1997. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc Natl Acad Sci U S A. 94(13):6815–6819. PubMed PMC

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S.. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30(12):2725–2729. PubMed PMC

Tavares MG, Carvalho CR, Soares F.. 2010. Genome size variation in Melipona species (Hymenoptera: Apidae) and sub-grouping by their DNA content. Apidologie 41(6):636–642.

Terrapon N, et al.2014. Molecular traces of alternative social organization in a termite genome. Nat Commun. 5(1):3636. PubMed

The C. elegans Sequencing Consortium. 1998. Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 282:2012–2018. PubMed

Trapnell C, et al.2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol. 28(5):511–515. PubMed PMC

Velarde RA, Sauer CD, Walden KKO, Fahrbach SE, Robertson HM.. 2005. Pteropsin: a vertebrate-like non-visual opsin expressed in the honey bee brain. Insect Biochem Mol Biol. 35(12):1367–1377. PubMed

Vellozo AF, et al.2011. CycADS: an annotation database system to ease the development and update of BioCyc databases. Database 2011(0):bar008–bar008. PubMed PMC

Vilhelmsen L. 2003. Larval anatomy of Orussidae (Hymenoptera). J Hymenopt Res. 12:346–354.

Vilhelmsen L, Isidoro N, Romani R, Basibuyuk HH, Quicke DLJ.. 2001. Host location and oviposition in a basal group of parasitic wasps: the subgenual organ, ovipositor apparatus and associated structures in the Orussidae (Hymenoptera, Insecta). Zoomorphology 121(2):63–84.

Vilhelmsen L, Turrisi GF.. 2011. Per arborem ad astra: morphological adaptations to exploiting the woody habitat in the early evolution of Hymenoptera. Arthropod Struct Dev. 40(1):2–20. PubMed

Vinson SB, Iwantsch GF.. 1980. Host regulation by insect parasitoids. Q Rev Biol. 55(2):143–165.

Visser B, et al.2010. Loss of lipid synthesis as an evolutionary consequence of a parasitic lifestyle. Proc Natl Acad Sci U S A. 107(19):8677–8682. PubMed PMC

Wakakuwa M, Kurasawa M, Giurfa M, Arikawa K.. 2005. Spectral heterogeneity of honeybee ommatidia. Naturwissenschaften 92(10):464–467. PubMed

Weihrauch D, Donini A, O’Donnell MJ.. 2012. Ammonia transport by terrestrial and aquatic insects. J Insect Physiol. 58(4):473–487. PubMed

Weinstock GM, et al.2006. Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443:931–949. PubMed PMC

Werren JH, et al.2010. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 327(5963):343–348. PubMed PMC

Whitfield JB. 1998. Phylogeny and evolution of host-parasitoid interactions in Hymenoptera. Annu Rev Entomol. 43(1):129–151. PubMed

Wilbrandt J, Misof B, Niehuis O.. 2017. COGNATE: comparative gene annotation characterizer. BMC Genomics 18(1):535. PubMed PMC

Wilfert L, Gadau J, Schmid-Hempel P.. 2007. Variation in genomic recombination rates among animal taxa and the case of social insects. Heredity 98(4):189–197. PubMed

Yamamoto DS, Sumitani M, Tojo K, Lee JM, Hatakeyama M.. 2004. Cloning of a decapentaplegic orthologue from the sawfly, Athalia rosae (Hymenoptera), and its expression in the embryonic appendages. Dev Genes Evol. 214(3):128–133. PubMed

Zdobnov EM, Bork P.. 2007. Quantification of insect genome divergence. Trends Genet. 23(1):16–20. PubMed

Zdobnov EM, et al.2017. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic Acids Res. 45(D1):D744–D749. PubMed PMC

Zhang G, et al.2012. The oyster genome reveals stress adaptation and complexity of shell formation. Nature 490(7418):49–54. PubMed

Zhou X, et al.2012. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. PLoS Genet. 8(8):e1002930. PubMed PMC

Zhou X, et al.2015. Chemoreceptor evolution in Hymenoptera and its implications for the evolution of eusociality. Genome Biol Evol. 7(8):2407–2416. PubMed PMC

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...