Survey and Monitoring of Phytophthora Species in Natural Ecosystems: Methods for Sampling, Isolation, Purification, Storage, and Pathogenicity Tests
Jazyk angličtina Země Spojené státy americké Médium print
Typ dokumentu časopisecké články, práce podpořená grantem
- Klíčová slova
- Agar media, Baiting, Canker, Forest decline, Inoculations, Koch’s postulates, Roots, Soil, Soil infestation, Water,
- MeSH
- ekosystém MeSH
- Phytophthora * MeSH
- půda MeSH
- půdní mikrobiologie MeSH
- virulence MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- půda MeSH
Phytophthora species can be found in multiple substrates. Due to dormancy of resting structures and presence of faster-growing antagonists, direct isolation of Phytophthora can be difficult to achieve, and indirect baiting methods often reach higher isolation frequencies. In this chapter, different methodologies are described for sampling and for the successful isolation of Phytophthora species from natural ecosystems. Sampling methods for soil, roots, bark cankers, and waterbodies are described. Agar recipes and guidance on the selection of suitable tissue to perform direct isolations are provided. A range of different baiting techniques are described for isolation of Phytophthora from different substrates. Purification methods to obtain clean and non-mixed cultures and conservation methods for pure cultures are shown. Two pathogenicity test methods for soil infestation and for under-bark inoculation, respectively, are described in detail.
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Erwin DC, Ribeiro OK (eds) (1996) Phytophthora diseases worldwide. APS Press, St. Paul
Jung T, Pérez-Sierra A, Durán A et al (2018a) Canker and decline diseases caused by soil- and airborne Phytophthora species in natural and semi–natural ecosystems. Persoonia 40:182–220 DOI
Jung T, Blaschke H, Neumann P (1996) Isolation, identification and pathogenicity of Phytophthora species from declining oak stands. Eur J For Pathol 26:253–272 DOI
Jung T, Colquhoun IJ, Hardy GESJ (2013) New insights into the survival strategy of the invasive soilborne pathogen Phytophthora cinnamomi in different natural ecosystems in Western Australia. For Pathol 43:266–288 DOI
Jung T, Orlikowski L, Henricot B et al (2016) Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. For Pathol 46:134–163 DOI
Jung T, Chang TT, Bakonyi J et al (2017a) Diversity of Phytophthora species in natural ecosystems of Taiwan and association with disease symptoms. Plant Pathol 66:194–211 DOI
Jung T, Durán A, Sanfuentes von Stowasser E et al (2018b) Diversity of Phytophthora species in Valdivian rainforests and association with severe dieback symptoms. For Pathol 48:e12443 DOI
Jung T, La Spada F, Pane A et al (2019) Diversity and distribution of Phytophthora species in protected natural areas in Sicily. Forests 10:259 DOI
Jung T, Scanu B, Brasier CM et al (2020) A survey in natural forest ecosystems of Vietnam reveals high diversity of both new and described Phytophthora taxa including P. ramorum. Forests 11:93 DOI
Jung T (2009) Beech decline in Central Europe driven by the interaction between Phytophthora infections and climatic extremes. For Pathol 39:73–94 DOI
Pérez-Sierra A, López-García C, León M et al (2013) Previously unrecorded low temperature Phytophthora species associated with Quercus decline in a Mediterranean forest in Eastern Spain. For Pathol 43:331–339 DOI
Jung T, Hansen EM, Winton L et al (2002) Three new species of Phytophthora from European oak forests. Mycol Res 106:397–411 DOI
Brasier CM (1967) Physiology of reproduction in Phytophthora. PhD thesis, University of Hull, UK, 220 pp
Jung T, Blaschke M (2004) Phytophthora root and collar rot of alders in Bavaria: distribution, modes of spread and possible management strategies. Plant Pathol 53:197–208 DOI
Hong C, Richardson PA et al (2002) Comparison of membrane filters as a tool for isolating pythiaceous species from irrigation water. Phytopathology 92:610–616 DOI
Scibetta S, Schena L, Chimento A et al (2012) A molecular method to assess Phytophthora diversity in environmental samples. J Microbiol Methods 88:356–368 DOI
Català S, Pérez-Sierra A, Abad-Campos P (2015) The use of genus-specific amplicon pyrosequencing to assess Phytophthora species diversity using eDNA from soil and water in northern Spain. PLoS One 10:1–14 DOI
Jung T, Horta Jung M, Webber JF et al (2021) The destructive tree pathogen Phytophthora ramorum originates from the Laurosilva forests of East Asia. J Fungi (Basel) 7:226 DOI
Campbell WA (1949) A method of isolation Phytophthora cinnamomi directly from soil. Plant Dis Rep 33:134–135
Ribeiro OK (ed) (1978) A source book of the genus Phytophthora. Cramer, Vaduz
Corcobado T, Cech TL, Brandstetter M et al (2020) Decline of European beech in Austria: involvement of Phytophthora spp. and contributing biotic and abiotic factors. Forests 11:895 DOI
Hüberli D, Hardy GESJ, White D et al (2013) Fishing for Phytophthora from Western Australia’s waterways: a distribution and diversity survey. Australas Plant Pathol 42:251–260 DOI
Jung T, Blaschke H, Osswald W (2000) Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease. Plant Pathol 49:706–718 DOI
Sleeth B (1945) Agar medium and technique for isolating Pythium free of bacteria. Phytopathology 35:1030–1031
Jung T, Horta Jung M, Scanu B et al (2017) Six new Phytophthora species from ITS Clade 7a including two sexually functional heterothallic hybrid species detected in natural ecosystems in Taiwan. Persoonia 38:100–135 DOI
Jönsson U, Jung T, Rosengren U et al (2003) Pathogenicity of Swedish isolates of Phytophthora quercina to Quercus robur in two different soils. New Phytol 158:355–364 DOI
Pérez-Sierra A, León M, Alvarez LA et al (2010) Outbreak of a new Phytophthora sp. associated with severe decline of almond trees in eastern Spain. Plant Dis 94:534–541 DOI