Lysobacter changpingensis sp. nov., a novel species of the genus Lysobacter isolated from a rhizosphere soil of strawberry in China
Language English Country United States Media print-electronic
Document type Journal Article
Grant support
31870004
National Natural Science Foundation of China
1610132021011
National Nonprofit Institute Research Grant of CAAS
202202AE090025
Major Science and Major Science and Technology Special Project of Yunnan Province
PubMed
37266892
PubMed Central
PMC10689546
DOI
10.1007/s12223-023-01058-8
PII: 10.1007/s12223-023-01058-8
Knihovny.cz E-resources
- Keywords
- Lysobacter sp., New species, Phenotypic, Rhizosphere microbiota,
- MeSH
- DNA, Bacterial genetics chemistry MeSH
- Phosphatidylethanolamines MeSH
- Phospholipids chemistry MeSH
- Phylogeny MeSH
- Fragaria * genetics MeSH
- Lysobacter * genetics MeSH
- Fatty Acids analysis MeSH
- Soil MeSH
- Rhizosphere MeSH
- RNA, Ribosomal, 16S genetics MeSH
- Sequence Analysis, DNA MeSH
- Bacterial Typing Techniques MeSH
- Publication type
- Journal Article MeSH
- Geographicals
- China MeSH
- Names of Substances
- DNA, Bacterial MeSH
- Phosphatidylethanolamines MeSH
- Phospholipids MeSH
- Fatty Acids MeSH
- Soil MeSH
- RNA, Ribosomal, 16S MeSH
In the present work, we characterized in detail strain CM-3-T8T, which was isolated from the rhizosphere soil of strawberries in Beijing, China, in order to elucidate its taxonomic position. Cells of strain CM-3-T8T were Gram-negative, non-spore-forming, aerobic, short rod. Growth occurred at 25-37 °C, pH 5.0-10.0, and in the presence of 0-8% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain CM-3-T8T formed a stable clade with Lysobacter soli DCY21T and Lysobacter panacisoli CJ29T, with the 16S rRNA gene sequence similarities of 98.91% and 98.50%. The average nucleotide identity and digital DNA-DNA hybridization values between strain SG-8 T and the two reference type strains listed above were 76.3%, 79.6%, and 34.3%, 27%, respectively. The DNA G + C content was 68.4% (mol/mol). The major cellular fatty acids were comprised of C15:0 iso (36.15%), C17:0 iso (8.40%), and C11:0 iso 3OH (8.28%). The major quinone system was ubiquinone Q-8. The major polar lipids were phosphatidylethanolamine (PE), phosphatidylethanolamine (PME), diphosphatidylglycerol (DPG), and aminophospholipid (APL). On the basis of phenotypic, genotypic, and phylogenetic evidence, strain CM-3-T8T (= ACCC 61714 T = JCM 34576 T) represents a new species within the genus Lysobacter, for which the name Lysobacter changpingensis sp. nov. is proposed.
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