Vanadium complex as a potential modulator of the autophagic mechanism through proteins PI3K and ULK1: development, validation and biological implications of a specific force field for [VO(bpy)2Cl]
Language English Country Great Britain, England Media print-electronic
Document type Journal Article
- Keywords
- AMBER force field, Autophagy, modulation, molecular dynamics, vanadium complex,
- MeSH
- Autophagy * drug effects MeSH
- Phosphatidylinositol 3-Kinases * metabolism chemistry MeSH
- Autophagy-Related Protein-1 Homolog * metabolism chemistry MeSH
- Intracellular Signaling Peptides and Proteins metabolism chemistry MeSH
- Coordination Complexes chemistry pharmacology MeSH
- Humans MeSH
- Molecular Dynamics Simulation MeSH
- Molecular Docking Simulation MeSH
- Vanadium chemistry metabolism MeSH
- Protein Binding MeSH
- Hydrogen Bonding MeSH
- Check Tag
- Humans MeSH
- Publication type
- Journal Article MeSH
- Names of Substances
- Phosphatidylinositol 3-Kinases * MeSH
- Autophagy-Related Protein-1 Homolog * MeSH
- Intracellular Signaling Peptides and Proteins MeSH
- Coordination Complexes MeSH
- ULK1 protein, human MeSH Browser
- Vanadium MeSH
The modulation of autophagy has been presented as a very useful strategy in anticancer treatments. In this sense, the vanadium complex (VC) bis(2,2'-bipyridine)chlorooxovanadium(IV), [VO(bpy)2Cl], is known for its ability to induce autophagy in triple-negative breast cancer cells (TNBC). An excellent resource to investigate the role of VC in the induction of autophagy is to make use of Molecular Dynamics (MD) simulations. However, until now, the scarcity of force field parameters for the VC prevented a reliable analysis. The autophagy signaling pathway starts with the PI3K protein and ends with ULK1. Therefore, in the first stage of this work, we developed a new AMBER force field for the VC (VCFF) from a quantum structure, obtained by DFT calculations. In the second stage, the VCFF was validated through structural analyses. From this, it was possible to investigate, through docking and MD (200 ns), the performance of the PI3K-VC and ULK1-VC systems (third stage). The analyses of this last stage involved RMSD, hydrogen bonds, RMSF and two pathways for the modulation of autophagy. In general, this work fills in the absence of force field parameters (FF) for VC by proposing an efficient and new FF, in addition to investigating, at the molecular level, how VC is able to induce autophagy in TNBC cells. This study encourages new parameterizations of metallic complexes and contributes to the understanding of the duality of autophagic processes.Communicated by Ramaswamy H. Sarma.
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