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Whole genomes from bacteria collected at diagnostic units around the world 2020

Scientific data. 2023 Sep 16 ; 10 (1) : 628. [epub] 20230916

Sci Data
ISSN 2052-4463
Source

Language English Country Great Britain, England Media electronic

Document type Dataset, Journal Article

Persistent link https://www.medvik.cz/link/pmid37717051

Grant support
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
87473 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
874735 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020)
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Online Full text

PubMed 37717051
PubMed Central PMC10505216
DOI 10.1038/s41597-023-02502-7
PII: 10.1038/s41597-023-02502-7
Knihovny.cz E-resources

The Two Weeks in the World research project has resulted in a dataset of 3087 clinically relevant bacterial genomes with pertaining metadata, collected from 59 diagnostic units in 35 countries around the world during 2020. A relational database is available with metadata and summary data from selected bioinformatic analysis, such as species prediction and identification of acquired resistance genes.

Alberta Precision Laboratories Alberta Canada

Bacteriology laboratory Centre hospitalier de Valenciennes Avenue Désandrouin Valenciennes 59300 France

Basic Medical Sciences Department Arab American University AAUP st Zababdeh P240 Jenin Palestine

Centro de Investigação em Saúde de Manhiça Manhiça Mozambique

Centro de Investigación para la Salud en América Latina Pontificia Universidad Católica del Ecuador Quinto 1701 2184 Pichincha Ecuador

Charalampous Microbiology Department National Reference Laboratory for Antimicrobial Resistance Surveillance Nicosia General Hospital 215 Paleos Dromos Lefkosia Lemesos str Strovolos 2029 Nicosia Cyprus

Chinese University of Hong Kong Shatin Hong Kong

Clinical Laboratory of Microbiology and Virology University Hospital Lozenetz Str Kozyak 1 Sofia 1407 Sofia Bulgaria

Clinical Research Unit of Nanoro National Institutes of Medical Research Ouagadougou 176 Burkina Faso

College of Medicine University of Ibadan Ibadan Oyo State Nigeria

Departamento de Bacteriologia Laboratorio Central de Salud Publico Avenida Venezuela y Tte Escurra Asunción CP 1429 Paraguay

Department Bioanalytica AG Luzern 6006 Switzerland

Department of Clinical and Molecular Microbiology University Hospital Centre Zagreb Kišpatićeva 12 Zagreb 10000 Croatia

Department of Clinical Tropical Medicine Faculty of Tropical Medicine Mahidol University Ratchawithi Road Bangkok 10400 Thailand

Department of Industrial Biotechnology Atta ur Rahman School of Applied Biosciences National University of Sciences and Technology H 12 Islamabad 44000 Pakistan

Department of Laboratory Nouna Health Research Centre Rue Namory Keita Nouna Burkina Faso

Department of Medical Microbiology Motol University Hospital 5 Uvalu 84 Prague 15006 Czech Republic

Department of Medical Sciences National Institute of Health Sariburi Thailand

Department of Medicine and Surgery University of Milano Bicocca Milan Italy

Department of Microbiology and Infection Control Akershus University Hospital Sykehusveien 25 Lørenskog 1478 Norway

Department of Microbiology PathWest Laboratory Medicine Fiona Stanley Hospital 9 Robin Warren Drive Murdoch 6150 Western Australia Australia

Department of Microbiology University Hospital in Plzen Edvarda Benese 1128 13 Plzen 305 99 Czech Republic

Department of Microbiology University of Dhaka Dhaka 1000 Bangladesh

Department of Pathology and Experimental Therapy Universitat de Barcelona Barcelona Spain

Department University of Joseph KI ZERBO Street Ouagadouogou Burkina Faso

Division of Clinical Bacteriology and Mycology University Hospital Basel Petersgraben 4 Basel 4031 Switzerland

Division of Clinical Microbiology Qatif Central Hospital 3213 Dharan Jubail Expressway Al Qatif 32654 7376 Eastern Province Saudi Arabia

Dronning Ingrids Hospital Nuuk Greenland

Faculty of Pharmacy University of Ibadan Ibadan Oyo State Nigeria

Institute of Microbiology Centre Hospitalier Universitaire de Lille Rue du Pr Jules Leclercq Lille 59037 France

Klinisk Mikrobiologisk Afdeling Hvidovre Hospital Kettegårds Allé Hvidovre 2650 Denmark

Laboratoire de Microbiologie Clinique Centre Hospitalo universitaire 1 place du 1er Mai 1945 Algiers 16000 Algeria

Laboratory Medicine Department Hospital of Lithuanian University of Health Sciences Kauno klinikos Eiveniu Str 2 Kaunas 50161 Lithuania

Levy Mwanawasa Teaching Hospital Lusaka Zambia

Lusaka Apex Medical School Lusaka Zambia

Medical Microbiology and Immunology University of Pecs Medical School Szigeti ut 12 Pecs 7631 Hungary

Medical Microbiology Department Karadeniz Technical University Farabi Hospital Farabi Hastanesi Trabzon 61080 Ortahisar Turkey

Microbiology Department Canberra Hospital Gilmore Cresent Garran 2605 Australian Capital Territory Australia

Microbiology Department Hospital de Bellvitge Barcelona 10587 Spain

Microbiology Department University Hospital Shefqet Ndroqi Rruga Dr Shefqet Ndroqi Sauk Tirana 1044 Albania

Microbiology Group Instituto Nacional de Salud Avenida Calle 26·51 20 CAN Bogotá 111321 Colombia

Molecular Diagnostic Section Khyber Teaching Hospital University Road Peshawar 25120 Pakistan

National Food Institute Technical University of Denmark Kemitorvet Kgs Lyngby 2800 Denmark

National Hospital Abuja Abuja Nigeria

National Reference Center for Antimicrobial Resistance National Institute of Public Health Research Dr Leopoldo Izquieta Pérez Iquique N14 285 Quito 170403 Pichicha Ecuador

Obafemi Awolowo University Ile Ife Nigeria

Otto von Guericke University Magdebourg Germany

Research Unit in Applied Microbiology and Pharmacology of Natural Substances Polytechnic School of Abomey Calavi University of Abomey Calavi 01 PO Box Abomey Calavi 2009 Cotonou Benin

Sekondi Public Health Laboratory Ghana Health Service Effia Nkwanta Regional Hospital Effia Nkwanta Regional Hospital Takoradi Ghana

Service de microbiologie Centre Integré Universitaire de Santé et de services sociaux de l'Estrie Centre Hospitalier Universitaire de Sherbrooke 3001 12è avenue Nord Sherbrooke J1H 5N4 Québec Canada

Southern Community Laboratories University of Otago 472 George Street Otago 9016 Dunedin New Zealand

Training and Research Unit in Applied Sciences and Technologies Biochemistry microbiology University of Dedougou Dedougou 176 Boucle du Mouhoun Burkina Faso

University College of Ibadan Ibadan Oyo State Nigeria

University Teaching Hospital Lusaka Zambia

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