Emergence of Escherichia coli ST131 carrying carbapenemase genes, European Union/European Economic Area, August 2012 to May 2024
Jazyk angličtina Země Švédsko Médium print
Typ dokumentu časopisecké články
PubMed
39574387
PubMed Central
PMC11583312
DOI
10.2807/1560-7917.es.2024.29.47.2400727
Knihovny.cz E-zdroje
- Klíčová slova
- Carbapenem-resistant Enterobacterales, Escherichia coli, antibiotics, antimicrobial resistance, carbapenemase, cross-border spread, surveillance, whole genome sequencing,
- MeSH
- antibakteriální látky farmakologie terapeutické užití MeSH
- bakteriální proteiny * genetika MeSH
- beta-laktamasy * genetika MeSH
- Escherichia coli * genetika izolace a purifikace MeSH
- Evropská unie * MeSH
- infekce vyvolané Escherichia coli * epidemiologie mikrobiologie MeSH
- lidé MeSH
- mikrobiální testy citlivosti MeSH
- multilokusová sekvenční typizace MeSH
- proteiny z Escherichia coli genetika MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- Geografické názvy
- Evropa epidemiologie MeSH
- Názvy látek
- antibakteriální látky MeSH
- bakteriální proteiny * MeSH
- beta-laktamasy * MeSH
- carbapenemase MeSH Prohlížeč
- proteiny z Escherichia coli MeSH
Analysis of 594 isolates of Escherichia coli sequence type (ST)131 and its single locus variants carrying carbapenemase genes from 17 European Union/European Economic Area countries revealed acquisition of 18 carbapenemase variants, mainly in ST131 clades A and C. Most frequent were bla OXA-244 (n = 230) and bla OXA-48 (n = 224), detected in 14 and 12 countries, respectively. Isolates carrying bla OXA-244 have increased rapidly since 2021. The increasing detection of carbapenemase genes in the E. coli high-risk lineage ST131 is a public health concern.
Department of Infectious Disease Epidemiology Robert Koch Institute Berlin Germany
European Centre for Disease Prevention and Control Stockholm Sweden
Finnish Institute for Health and Welfare Helsinki Finland
Galway Reference Laboratory Service Galway University Hospital Galway Ireland
National Centre for Public Health and Pharmacy Budapest Hungary
National Laboratory of Health Environment and Food Centre for Medical Microbiology Maribor Slovenia
National Public Health Surveillance Laboratory Vilnius Lithuania
National Reference Laboratory for Antibiotics National Institute of Public Health Prague Czechia
Public Health Agency of Sweden Solna Sweden
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Murray CJL, Ikuta KS, Sharara F, Swetschinski L, Robles Aguilar G, Gray A, et al. Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis. Lancet. 2022;399(10325):629-55. 10.1016/S0140-6736(21)02724-0 PubMed DOI PMC
Mathers AJ, Peirano G, Pitout JD. The role of epidemic resistance plasmids and international high-risk clones in the spread of multidrug-resistant Enterobacteriaceae. Clin Microbiol Rev. 2015;28(3):565-91. 10.1128/CMR.00116-14 PubMed DOI PMC
Welker S, Boutin S, Miethke T, Heeg K, Nurjadi D. Emergence of carbapenem-resistant ST131 Escherichia coli carrying bla OXA-244 in Germany, 2019 to 2020. Euro Surveill. 2020;25(46):2001815. 10.2807/1560-7917.ES.2020.25.46.2001815 PubMed DOI PMC
Piazza A, Corbella M, Mattioni Marchetti V, Merla C, Mileto I, Kuka A, et al. Clinical isolates of ST131 blaOXA-244-positive Escherichia coli, Italy, December 2022 to July 2023. Euro Surveill. 2024;29(8):2400073. 10.2807/1560-7917.ES.2024.29.8.2400073 PubMed DOI PMC
Patiño-Navarrete R, Rosinski-Chupin I, Cabanel N, Zongo PD, Héry M, Oueslati S, et al. Specificities and Commonalities of Carbapenemase-Producing Escherichia coli Isolated in France from 2012 to 2015. mSystems. 2022;7(1):e0116921. 10.1128/msystems.01169-21 PubMed DOI PMC
Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012;19(5):455-77. 10.1089/cmb.2012.0021 PubMed DOI PMC
Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol. 2019;37(5):540-6. 10.1038/s41587-019-0072-8 PubMed DOI
Silva M, Machado MP, Silva DN, Rossi M, Moran-Gilad J, Santos S, et al. chewBBACA: A complete suite for gene-by-gene schema creation and strain identification. Microb Genom. 2018;4(3):e000166. 10.1099/mgen.0.000166 PubMed DOI PMC
Zhou Z, Alikhan NF, Mohamed K, Fan Y, Achtman M, Agama Study Group . The EnteroBase user’s guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity. Genome Res. 2020;30(1):138-52. 10.1101/gr.251678.119 PubMed DOI PMC
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, et al. Multilocus sequence typing of total-genome-sequenced bacteria. J Clin Microbiol. 2012;50(4):1355-61. 10.1128/JCM.06094-11 PubMed DOI PMC
Wirth T, Falush D, Lan R, Colles F, Mensa P, Wieler LH, et al. Sex and virulence in Escherichia coli: an evolutionary perspective. Mol Microbiol. 2006;60(5):1136-51. 10.1111/j.1365-2958.2006.05172.x PubMed DOI PMC
Roer L, Tchesnokova V, Allesøe R, Muradova M, Chattopadhyay S, Ahrenfeldt J, et al. Development of a web tool for Escherichia coli subtyping based on fimH alleles. J Clin Microbiol. 2017;55(8):2538-43. 10.1128/JCM.00737-17 PubMed DOI PMC
Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, et al. ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother. 2020;75(12):3491-500. 10.1093/jac/dkaa345 PubMed DOI PMC
Schürch AC, Arredondo-Alonso S, Willems RJL, Goering RV. Whole genome sequencing options for bacterial strain typing and epidemiologic analysis based on single nucleotide polymorphism versus gene-by-gene-based approaches. Clin Microbiol Infect. 2018;24(4):350-4. 10.1016/j.cmi.2017.12.016 PubMed DOI
Manges AR, Geum HM, Guo A, Edens TJ, Fibke CD, Pitout JDD. Global extraintestinal pathogenic Escherichia coli (ExPEC) lineages. Clin Microbiol Rev. 2019;32(3):e00135-18. 10.1128/CMR.00135-18 PubMed DOI PMC
Emeraud C, Biez L, Girlich D, Jousset AB, Naas T, Bonnin RA, et al. Screening of OXA-244 producers, a difficult-to-detect and emerging OXA-48 variant? J Antimicrob Chemother. 2020;75(8):2120-3. 10.1093/jac/dkaa155 PubMed DOI
Peirano G, Bradford PA, Kazmierczak KM, Badal RE, Hackel M, Hoban DJ, et al. Global incidence of carbapenemase-producing Escherichia coli ST131. Emerg Infect Dis. 2014;20(11):1928-31. 10.3201/eid2011.141388 PubMed DOI PMC
Peirano G, Chen L, Nobrega D, Finn TJ, Kreiswirth BN, DeVinney R, et al. Genomic epidemiology of global carbapenemase-producing Escherichia coli, 2015-2017. Emerg Infect Dis. 2022;28(5):924-31. 10.3201/eid2805.212535 PubMed DOI PMC
Pitout JDD, Finn TJ. The evolutionary puzzle of Escherichia coli ST131. Infect Genet Evol. 2020;81:104265. 10.1016/j.meegid.2020.104265 PubMed DOI
Gladstone RA, McNally A, Pöntinen AK, Tonkin-Hill G, Lees JA, Skytén K, et al. Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002-17: a nationwide, longitudinal, microbial population genomic study. Lancet Microbe. 2021;2(7):e331-41. 10.1016/S2666-5247(21)00031-8 PubMed DOI PMC
Stoesser N, Sheppard AE, Pankhurst L, De Maio N, Moore CE, Sebra R, et al. Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131. MBio. 2016;7(2):e02162. 10.1128/mBio.02162-15 PubMed DOI PMC
Linkevicius M, Bonnin RA, Alm E, Svartström O, Apfalter P, Hartl R, et al. Rapid cross-border emergence of NDM-5-producing Escherichia coli in the European Union/European Economic Area, 2012 to June 2022. Euro Surveill. 2023;28(19):2300209. 10.2807/1560-7917.ES.2023.28.19.2300209 PubMed DOI PMC
European Centre for Disease Prevention and Control (ECDC). Rapid risk assessment: Increase in OXA-244-producing Escherichia coli in the European Union/European Economic Area and the UK since 2013, first update. Stockholm: ECDC; 2021. Available from: https://www.ecdc.europa.eu/en/publications-data/rapid-risk-assessment-increase-oxa-244-producing-escherichia-coli-eu-eea
Haidar G, Clancy CJ, Shields RK, Hao B, Cheng S, Nguyen MH. Mutations in blaKPC-3 that confer ceftazidime-avibactam resistance encode novel KPC-3 variants that function as extended-spectrum β-lactamases. Antimicrob Agents Chemother. 2017;61(5):e02534-16. 10.1128/AAC.02534-16 PubMed DOI PMC