• This record comes from PubMed

Phylogeny and systematics of Arabian lacertids from the Mesalina guttulata species complex (Squamata, Lacertidae), with the description of a new species

. 2025 Jul 01 ; 10 (1) : 11. [epub] 20250701

Status PubMed-not-MEDLINE Language English Country Great Britain, England Media electronic

Document type Journal Article

Links

PubMed 40598394
PubMed Central PMC12210645
DOI 10.1186/s40850-025-00233-3
PII: 10.1186/s40850-025-00233-3
Knihovny.cz E-resources

BACKGROUND: The lacertid genus Mesalina has been the subject of several phylogenetic and biogeographic studies as well as taxonomic revisions within the last decade. The genus is partitioned into seven main clades, some of which represent species complexes of morphologically very similar species. The Mesalina guttulata species complex is one such case. This complex currently comprises four described species that occur through Arabia and northern Africa, however, the presence of a cryptic species in Saudi Arabia, Kuwait, and Jordan was pointed out recently. For this study, we collected new material of the various species of the M. guttulata complex, including the undescribed lineage from across Saudi Arabia. We carried out multilocus phylogenetic analyses using three mitochondrial and three nuclear markers and analysis of morphological data to verify whether the undescribed lineage deserves a species rank. RESULTS: The results show that the lineage is clearly genetically separated from the other species of the complex and shows morphological differentiation from the other species. Therefore, we describe it herein as a new species, Mesalina cryptica sp. nov. CONCLUSIONS: We contribute to the taxonomy of Arabian lacertid lizards by describing a new species distributed in central Saudi Arabia, with isolated populations occurring in Kuwait and Jordan. Despite its large range, the species is genetically and morphologically homogeneous. The gap in its distribution between the Jordan and Saudi Arabia populations is ascribable to the paucity of sampling along the Saudi/Iraqi border.

See more in PubMed

Šmíd J, Uvizl M, Shobrak M, AlGethami RHM, AlGethami, Alanazi ASK, Alsubaie SD, Busais S, Carranza S. Swimming through the sands of the Sahara and Arabian deserts: Phylogeny of sandfish skinks (scincidae, PubMed

Mochales-Riaño G, Burriel-Carranza B, Barros MI, Velo-Antón G, Talavera A, Spilani L, Tejero-Cicuéndez H, Crochet P-A, Piris A, García-Cardenete L, et al Hidden in the sand: Phylogenomics unravel an unexpected evolutionary history for the desert-adapted vipers of the genus cerastes. Mol Phylogenet Evol. 2024;191:107979. PubMed

Metallinou M, Červenka J, Crochet P-A, Kratochvíl L, Wilms T, Geniez P, Shobrak MY, Brito JC, Carranza S. Species on the rocks: Systematics and biogeography of the rock-dwelling PubMed

Šmíd J, Carranza S, Kratochvíl L, Gvoždík V, Nasher AK, Moravec J. Out of Arabia: A complex biogeographic history of multiple vicariance and dispersal events in the gecko genus PubMed PMC

Pola L, Crochet P-a, Geniez P, Shobrak M, Busais S, Jablonski D, Masroor R, Abduraupov T, Carranza S, Šmíd J. Some like it hot: Past and present phylogeography of a desert dwelling gecko across the Arabian Peninsula. J Biogeogr. 2024;51(7):1244–58.

Tamar K, Metallinou M, Wilms T, Schmitz A, Crochet PA, Geniez P, Carranza S. Evolutionary history of spiny-tailed lizards (agamidae:

Tamar K, Carranza S, Sindaco R, Moravec J, Trape J-F, Meiri S. Out of Africa: phylogeny and biogeography of the widespread genus PubMed

Sindaco R, Metallinou M, Pupin F, Fasola M, Carranza S. Forgotten in the ocean: systematics, biogeography and evolution of the

Metallinou M, Arnold EN, Crochet P-A, Geniez P, Brito JC, Lymberakis P, Baha El Din SM, Sindaco R, Robinson M, Carranza S. Conquering the Sahara and Arabian deserts: Systematics and biogeography of PubMed PMC

Tejero-Cicuéndez H, Patton AH, Caetano DS, Šmíd J, Harmon LJ, Carranza S. Reconstructing squamate biogeography in Afro-Arabia reveals the influence of a complex and dynamic geologic past. Syst Biol. 2022;71(2):261–72. PubMed PMC

Metallinou M, Carranza S. New species of PubMed

Licata F, Pola L, Šmíd J, Ibrahim AA, Liz AV, Santos B, Patkó L, Abdulkareem A, Gonçalves DV, AlShammari AM, et al. The missing piece of the puzzle: a new and widespread species of the genus

Šmíd J, Uvizl M, Shobrak M, Busais S, Salim AFA, AlGethami RHM, AlGethami AR, Alanazi ASK, Alsubaie SD, Rovatsos M, et al. Diversification of

Šmíd J, Shobrak M, Wilms T, Joger U, Carranza S. Endemic diversification in the mountains: genetic, morphological, and geographical differentiation of the

Tamar K, Mitsi P, SimÓ-Riudalbas M, Tejero-Cicuéndez H, Al-Sariri T, Carranza S. Systematics, biogeography, and evolution of

Tamar K, Mitsi P, Carranza S. Cryptic diversity revealed in the leaf-toed gecko

Tamar K, Uvizl M, Shobrak M, Almutairi M, Busais S, Salim AFA, AlGethami RHM, AlGethami AR, Alanazi ASK, Alsubaie SD, et al. A new species of

Carranza S, Simó-Riudalbas M, Jayasinghe S, Wilms T, Els J. Microendemicity in the northern Hajar mountains of Oman and the United Arab Emirates with the description of two new species of geckos of the genus PubMed PMC

Carranza S, Arnold EN. A review of the geckos of the genus

Šmíd J, Moravec J, Gvoždík V, Štundl J, Frynta D, Lymberakis P, Kapli P, Wilms T, Schmitz A, Shobrak M, et al. Cutting the gordian knot: Phylogenetic and ecological diversification of the

Šmíd J, Sindaco R, Shobrak M, Busais S, Tamar K, Aghová T, Simó-Riudalbas M, Tarroso P, Geniez P, Crochet P-A, et al. Diversity patterns and evolutionary history of Arabian squamates. J Biogeogr. 2021;48:1183–99.

Aloufi A, Amr Z, Baker MA. Reptiles from’Uruq Bani Ma’arid and Harat al Harrah protected areas in Saudi Arabia: Reptiles from two protected areas in Saudi Arabia. Herpetol Notes. 2022;15:483–91.

Aloufi A, Al Zayer M, Amr ZS. Reptiles and amphibians along the coastal area of the eastern province, Saudi Arabia. Ecol Montenegrina. 2023;68:66–87.

Alshammari AM, Busais SM, Ibrahim AA. Snakes in the province of Ha’il, Kingdom of Saudi Arabia, including two new records. Herpetozoa. 2017;30(1/2):1–5.

Alshammari AM, Busais SM. Distribution of snakes in Ha’il Province, Saudi Arabia, with an identification key to the species. Russ J Herpetol. 2020; 27(1):5–10.

Tamar K, Chirio L, Shobrak M, Busais S, Carranza S. Using multilocus approach to uncover cryptic diversity within PubMed PMC

Pola L, Egan DM, Mukhtar FA, Alkaboor AA, Ferguson E, Rowntree N, Velenská D, Waldhauser V, Hlaváč D, Roobas B, et al. Beyond boundaries: Phylogeographic structure and major range extension of the sinai fan-toed gecko,

van Huyssteen R, Petford MA, Burger M, Šmíd J, Alzahrani AS, Alowaifeer AM, Mottram P, Gaugris JY. Reptiles of the king abdulaziz royal nature reserve, east-central Saudi Arabia: Insights and conservation implications. Amphib Reptile Conserv. 2024;18(1&2):91–106.

Edgell HS. Arabian Deserts: nature, Origin and Evolution. Dordrecht, The Netherlands: Springer; 2006.

Wilms TM, Shobrak M, Wagner P. A new species of the genus

Sindaco R, Simo-Riudalbas M, Sacchi R, Carranza S. Systematics of the PubMed

Simó-Riudalbas M, Tamar K, Šmíd J, Mitsi P, Sindaco R, Chirio L, Carranza S. Biogeography of PubMed

Segoli M, Cohen T, Werner YL. A new lizard of the genus

Dinerstein E, Olson D, Joshi A, Vynne C, Burgess ND, Wikramanayake E, Hahn N, Palminteri S, Hedao P, Noss R, et al An ecoregion-based approach to protecting half the terrestrial realm. Biosci. 2017;67(6):534–45. PubMed PMC

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C. Geneious basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinform. 2012;28(12):1647–49. PubMed PMC

Nguyen L-T, Schmidt HA, Von Haeseler A, Minh BQ. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2015;32(1):268–74. PubMed PMC

Trifinopoulos J, Nguyen L-T, von Haeseler A, Minh BQ. W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 2016;44(W1):W232–W235. PubMed PMC

Guindon S, Dufayard J-F, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010;59(3):307–21. PubMed

Minh BQ, Nguyen MAT, Von Haeseler A. Ultrafast approximation for phylogenetic bootstrap. Mol Biol Evol. 2013;30(5):1188–95. PubMed PMC

Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 2012;61(3):539–42. PubMed PMC

Lanfear R, Calcott B, Ho SYW, Guindon S. PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol Biol Evol. 2012;29(6):1695–701. PubMed

Rambaut A, Drummond A. Tracer v1.4. Available from: http://beast.bio.ed.ac.uk/Tracer. 2007.

Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol. 2018;35(6):1547–49. PubMed PMC

Stephens M, Smith NJ, Donnelly P. A new statistical method for haplotype reconstruction from population data. Am J Hum Genet. 2001;68(4):978–89. PubMed PMC

Flot JF. Seqphase: a web tool for interconverting phase input/output files and fasta sequence alignments. Mol Ecol Resour. 2010;10(1):162–66. PubMed

Clement M, Snell Q, Walker P, Posada D, Crandall K TCS: Estimating gene genealogies. In:

Leigh JW, Bryant D. POPART: Full-feature software for haplotype network construction. Methods Ecol Evol. 2015;6(9):1110–16.

Bryant D, Moulton V. Neighbor-net: An agglomerative method for the construction of phylogenetic networks. Mol Biol Evol. 2004;21(2):255–65. PubMed

Huson DH, Bryant D. Application of phylogenetic networks in evolutionary studies. Mol Biol Evol. 2006;23(2):254–67. PubMed

Bruen TC, Philippe H, Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics. 2006;172(4):2665–81. PubMed PMC

Rannala B, Yang Z. Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. Genetics. 2003;164(4):1645–56. PubMed PMC

Yang Z, Rannala B. Bayesian species delimitation using multilocus sequence data. Proc Natl Acad Sci. 2010;107(20):9264–69. PubMed PMC

Yang Z. The BPP program for species tree estimation and species delimitation. Curr Zool. 2015;61(5):854–65.

Pizzigalli C, Crochet PA, Geniez P, Martínez-Freiría F, Velo-Antón G, Carlos Brito J. Phylogeographic diversification of the

Wuertz D, Setz T, Chalabi Y, Maechler M, Setz MT. Package ‘Fbasics’. Rmetrics-Markets and Basic Statistics R Foundation for Statistical Computing; 2017.

Al-Sadoon M. Survey of the reptilian fauna of the Kingdom of Saudi Arabia. II. The lizards and amphisbaenian fauna of Riyadh province. Bull Md Herpetol Soc. 1988;24(3):58–76.

Ross W. Observation on three species of

Tilbury CR. An annotated checklist of some of the commoner reptiles occurring around Riyadh, Kingdom of Saudi Arabia. Afr J Herpetol. 1988;34(1):25–34.

Kordges T. Die reptilienfauna des thumamah nature park bei Riyadh, Saudi Arabien. Zoologische Abhandlungen Staatliches Museum Für Tierkunde Dresden. 1998;21:67–83.

Disi AM, Modrý D, Bunian F, Al-Oran RM, Amr ZS. Amphibians and reptiles of the Badia region of Jordan. Herpetozoa. 1999;12(3/4):135–46.

Kapli P, Lymberakis P, Crochet PA, Geniez P, Brito JC, Almutairi M, Ahmadzadeh F, Schmitz A, Wilms T, Rastegar-Pouyani N, et al. Historical biogeography of the lacertid lizard

Al-Sadoon MK, Paray BA, Al-Otaibi HS. Survey of the reptilian fauna of the Kingdom of Saudi Arabia. V. The lizard fauna of Turaif region. Saudi J Biol Sci. 2016;23(5):642–48. PubMed PMC

Pola L, Hejduk V, Winkelhöfer T, Zíka A, Baker MAA, Amr ZS. Recent observations on amphibians and reptiles in the Hashemite Kingdom of Jordan. Jordan J Nat Hist. 2020;7:11–29.

Pola L, Velenská D, Prondzynska KM, Hejduk V, Zíka A, Winkelhöfer T, Baker MAA, Amr ZS, Šmíd J. More geckos, fewer gaps: diversity and distribution of

Bachman S, Moat J, Hill AW, De La Torre J, Scott B. Supporting red list threat assessments with GeoCAT: Geospatial conservation assessment tool. ZooKeys. 2011;150(117–126). PubMed PMC

Machado L, Salvi D, Harris DJ, Brito JC, Crochet P-A, Geniez P, Ahmadzadeh F, Carranza S. Systematics, biogeography and evolution of the Saharo-Arabian naked-toed geckos genus PubMed

Tamar K, Scholz S, Crochet P-A, Geniez P, Meiri S, Schmitz A, Wilms T, Carranza S. Evolution around the Red Sea: Systematics and biogeography of the agamid genus PubMed

Pook CE, Joger U, Stümpel N, Wüster W. When continents collide: phylogeny, historical biogeography and systematics of the medically important viper genus PubMed

Anton D. Aspects of geomorphological evolution; paleosols and dunes in Saudi Arabia. In: Quaternary Period in Saudi Arabia. Springer; 1984. p. 275–96.

Kapli P, Lymberakis P, Poulakakis N, Mantziou G, Parmakelis A, Mylonas M. Molecular phylogeny of three PubMed

Aloufi AA, Amr ZS, Abu Baker MA. Reptiles and amphibians of Al Madinah Al Munawwarah province, Saudi Arabia. Russ J Herpetol. 2021;28(3):123–37.

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...