Sexual dimorphism in zebrafish liver proteins and implications for hepatic regeneration and diseases

. 2025 Sep 29 ; 15 (1) : 33565. [epub] 20250929

Jazyk angličtina Země Velká Británie, Anglie Médium electronic

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/pmid41023193
Odkazy

PubMed 41023193
PubMed Central PMC12480104
DOI 10.1038/s41598-025-18599-2
PII: 10.1038/s41598-025-18599-2
Knihovny.cz E-zdroje

The liver is a central metabolic hub, performing vital functions such as bile production, protein, carbohydrate, lipid and drug metabolism, detoxification of xenobiotics, and the synthesis of essential biomolecules for reproduction, and also shows regenerative capability. Several of these functions can be affected by sexual dimorphisms with important consequences. In this study we used high-throughput proteomics to identify and quantify proteins involved in sexual dimorphism of the zebrafish liver, as a model for preclinical human research. Additionally, we conducted an extensive literature review to explore potential effects of sex-biased protein abundances on liver regeneration capacity and hepatic diseases. The results showed wide-spread sex-specific differences in proteins involved in carbohydrate, protein, and lipid metabolism. Female livers exhibited higher levels of proteins involved in protein synthesis, while male liver protein abundances were higher in energy-producing biochemical pathways, such as the TCA, β-oxidation, and glycolysis. Furthermore, significant sex differences were observed in proteins related to drug metabolism, which should be considered in toxicological and pharmacological research. Some potential links between sex-biased quantities of some key hepatic proteins and the susceptibility of males to liver diseases, as well as the higher hepatic regenerative capacity in females, were suggested. These findings offer a foundation for future targeted research to facilitate the development of sex-specific therapeutic approaches for liver disorders and regenerative medicine. Data are available via ProteomeXchange with identifier PXD061886.

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Huang, Y. B. et al. Deciphering genetic causes for sex differences in human health through drug metabolism and transporter genes. PubMed DOI PMC

Mauvais-Jarvis, F. Sex differences in energy metabolism: natural selection, mechanisms and consequences. PubMed DOI

Fish, E. N. The X-files in immunity: sex-based differences predispose immune responses. PubMed DOI PMC

Chiang, J. Liver physiology: metabolism and detoxification. In: (eds McManus, L.M. & Mitchell, R.N.) Pathobiology of Human Disease. San Diego: Elsevier; 1770–1782. (2014).

Smiriglia, A. et al. Sex difference in liver diseases: how preclinical models help to dissect the sex-related mechanisms sustaining NAFLD and hepatocellular carcinoma. PubMed DOI PMC

Riazi, K. et al. The prevalence and incidence of NAFLD worldwide: a systematic review and meta-analysis. PubMed DOI

Birrer, D. L. et al. Sex disparities in outcomes following major liver surgery new powers of estrogen?? PubMed DOI

Howe, K. et al. The zebrafish reference genome sequence and its relationship to the human genome. PubMed DOI PMC

Goessling, W., Sadler, K. C. & Zebrafish An important tool for liver disease research. PubMed DOI PMC

Niksirat, H., Siino, V., Steinbach, C. & Levander, F. High-resolution proteomic profiling shows sexual dimorphism in Zebrafish heart-associated proteins. PubMed DOI

Niksirat, H., Siino, V., Steinbach, C. & Levander, F. The quantification of zebrafish ocular-associated proteins provides hints for sex-biased visual impairments and perception. PubMed DOI PMC

Niksirat, H., Siino, V., Steinbach, C. & Levander, F. Sex programs functional protein level dimorphism in the zebrafish gastrointestinal tract. DOI

Zheng, W. L. et al. Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. PubMed DOI PMC

Qiao, Q. et al. Deep sexual dimorphism in adult medaka fish liver highlighted by multi-omic approach. PubMed DOI PMC

Niksirat, H., Levander, F., Kouba, A. & James, P. Proteomic changes after fertilization and before first cleavage in rainbow trout. DOI

Mengal, K. et al. Quantification of proteomic profile changes in the hemolymph of crayfish during coagulation. PubMed DOI

Siino, V. et al. Plasma proteome profiling of healthy individuals across the life span in a Sicilian cohort with long-lived individuals. PubMed DOI PMC

Cox, J. & Mann, M. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. PubMed DOI

Willforss, J., Chawade, A. & Levander, F. NormalyzerDE: online tool for improved normalization of omics expression data and high-sensitivity differential expression analysis. PubMed DOI

Taverner, T. et al. DanteR: an extensible R-based tool for quantitative analysis of -omics data. PubMed DOI PMC

Ritchie, M. E. et al. Limma powers differential expression analyses for RNA-sequencing and microarray studies. PubMed DOI PMC

Willforss, J., Siino, V. & Levander, F. OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons. PubMed DOI PMC

Ge, S. X., Jung, D. M. & Yao, R. A. ShinyGO: a graphical gene-set enrichment tool for animals and plants. PubMed DOI PMC

Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. PubMed DOI PMC

Yu, G. C., Wang, L. G., Han, Y. Y. & He, Q. Y. ClusterProfiler: an R package for comparing biological themes among gene clusters. PubMed DOI PMC

Perez-Riverol, Y. et al. The PRIDE database at 20 years: 2025 update. PubMed DOI PMC

Kanehisa, M., Furumichi, M., Sato, Y., Matsuura, Y. & Ishiguro-Watanabe, M. KEGG: biological systems database as a model of the real world. PubMed DOI PMC

Kanehisa, M. Toward understanding the origin and evolution of cellular organisms. PubMed DOI PMC

Kanehisa, M. & Goto, S. K. E. G. G. Kyoto encyclopedia of genes and genomes. PubMed DOI PMC

Kanehisa, M., Sato, Y. & Kawashima, M. KEGG mapping tools for uncovering hidden features in biological data. PubMed DOI PMC

Kanehisa, M. & Sato, Y. KEGG mapper for inferring cellular functions from protein sequences. PubMed DOI PMC

Hara, A., Hiramatsu, N. & Fujita, T. Vitellogenesis and choriogenesis in fishes. DOI

Lubzens, E., Young, G., Bobe, J. & Cerdà, J. Oogenesis in teleosts: how fish eggs are formed. PubMed DOI

Lim, E. H., Ding, J. L. & Lam, T. J. Estradiol-induced vitellogenin gene-expression in a teleost fish, oreochromis-aureus. PubMed DOI

Levi, L. et al. Revealing genes associated with vitellogenesis in the liver of the zebrafish by transcriptome profiling. PubMed DOI PMC

Tsugawa, Y., Natori, M., Handa, H. & Imai, T. Estradiol accelerates liver regeneration through estrogen receptor α. PubMed DOI PMC

Robison, B. D. et al. Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio). PubMed DOI PMC

Hayward, A. & Gillooly, J. F. The cost of sex: quantifying energetic investment in gamete production by males and females. PubMed DOI PMC

Li, D. et al. Testosterone regulates thymic remodeling by altering metabolic reprogramming in male rats. PubMed DOI

Zang, C. et al. Does losing reduce the tendency to engage with rivals to reach mates? An experimental test. PubMed DOI PMC

Akinrinade, I. D., Varela, S. A. M. & Oliveira, R. F. Sex differences in social buffering and social contagion of alarm responses in zebrafish. PubMed DOI PMC

Waxman, D. J. & Holloway, M. G. Sex differences in the expression of hepatic drug metabolizing enzymes. PubMed DOI PMC

Moore, C. J., Holstege, C. P. & Papin, J. A. Metabolic modeling of sex-specific liver tissue suggests mechanism of differences in toxicological responses. PubMed DOI PMC

Dhir, R. N., Dworakowski, W., Thangavel, C. & Shapiro, B. H. Sexually dimorphic regulation of hepatic isoforms of human cytochrome P450 by growth hormone. PubMed DOI

Sedano, C. D., Sarnow, P. & Hepatitis, C. Virus subverts Liver-Specific miR-122 to protect the viral genome from exoribonuclease Xrn2. PubMed DOI PMC

Li, Y., Yamane, D. & Lemon, S. M. Dissecting the roles of the 5′ exoribonucleases Xrn1 and Xrn2 in restricting hepatitis C virus replication. PubMed DOI PMC

Cornberg, M. et al. A systematic review of hepatitis C virus epidemiology in europe, Canada and Israel. PubMed DOI

Sanchez-Lozada, L. G. et al. Uric acid activates aldose reductase and the polyol pathway for endogenous fructose and fat production causing development of fatty liver in rats. PubMed DOI PMC

Qiu, L. X. & Guo, C. Natural aldose reductase inhibitor: a potential therapeutic agent for non-alcoholic fatty liver disease. PubMed DOI

Voelkl, J. et al. Up-regulation of hepatic alpha-2-HS-glycoprotein transcription by testosterone androgen receptor activation. PubMed DOI

Stefan, N. et al. α-Heremans-Schmid glycoprotein/fetuin-A is associated with insulin resistance and fat accumulation in the liver in humans. PubMed DOI

Ochieng, J. et al. Impact of Fetuin-A (AHSG) on tumor progression and type 2 diabetes. PubMed DOI PMC

Zhou, Z., Sun, B., Huang, S. Q., Yu, D. S. & Zhang, X. C. Roles of aminoacyl-tRNA synthetase-interacting multi-functional proteins in physiology and cancer. PubMed DOI PMC

Jung, T. W. et al. C1q/TNF-related protein 9 (CTRP9) attenuates hepatic steatosis via the autophagy-mediated Inhibition of endoplasmic reticulum stress. PubMed DOI

Buzzetti, E. et al. Collagen proportionate area is an independent predictor of long-term outcome in patients with non-alcoholic fatty liver disease. PubMed DOI

Karsdal, M. A. et al. Collagen biology and non-invasive biomarkers of liver fibrosis. PubMed DOI

Ding, D. Y. et al. Collagen in hepatocellular carcinoma: a novel biomarker and therapeutic target. PubMed DOI PMC

Meir, M. et al. The COP9 signalosome is vital for timely repair of DNA double-strand breaks. PubMed DOI PMC

Lei, D. X. et al. Hepatic deficiency of COP9 signalosome subunit 8 induces ubiquitin-proteasome system impairment and bim-mediated apoptosis in murine livers. PubMed DOI PMC

Thuy, L. T. T. et al. Cytoglobin deficiency promotes liver cancer development from hepatosteatosis through activation of the oxidative stress pathway. PubMed DOI

Thuy, L. T. T., Hai, H. & Kawada, N. Role of cytoglobin, a novel radical scavenger, in stellate cell activation and hepatic fibrosis. PubMed DOI PMC

Chen, F. H. et al. Loss of Ufl1/Ufbp1 in hepatocytes promotes liver pathological damage and carcinogenesis through activating mTOR signaling. PubMed DOI PMC

Wazir, U., Jiang, W. G., Sharma, A. K. & Mokbel, K. The mRNA expression of DAP1 in human breast cancer: correlation with clinicopathological parameters. PubMed

Jia, Y. N. et al. Death associated protein 1 is correlated with the clinical outcome of patients with colorectal cancer and has a role in the regulation of cell death. PubMed DOI

Willis, J., Patel, Y., Lentz, B. L. & Yan, S. APE2 is required for ATR-Chk1 checkpoint activation in response to oxidative stress. PubMed DOI PMC

Wallace, S. S. Base excision repair: a critical player in many games. PubMed DOI PMC

Li, Y. L. et al. Mechanisms and effects on HBV replication of the interaction between HBV core protein and cellular filamin B. PubMed DOI PMC

Wang, S. H., Chen, P. J. & Yeh, S. H. Gender disparity in chronic hepatitis B: mechanisms of sex hormones. PubMed DOI

Parry, E. M. et al. Decreased dyskerin levels as a mechanism of telomere shortening in X-linked dyskeratosis congenita. PubMed DOI PMC

Garus, A. & Autexier, C. Dyskerin: an essential pseudouridine synthase with multifaceted roles in ribosome biogenesis, splicing, and telomere maintenance. PubMed DOI PMC

Donati, B., Valenti, L. & Telomeres NAFLD and chronic liver disease. PubMed DOI PMC

Kim, D., Li, A. A. & Ahmed, A. Leucocyte telomere shortening is associated with nonalcoholic fatty liver disease-related advanced fibrosis. PubMed DOI

Barnard, A., Moch, A. & Saab, S. Relationship between telomere maintenance and liver disease. PubMed DOI PMC

Sun, L., Guo, S. W., Xie, Y. P. & Yao, Y. L. The characteristics and the multiple functions of integrin β1 in human cancers. PubMed DOI PMC

Nejjari, M. et al. Integrin up-regulation in chronic liver disease: relationship with inflammation and fibrosis in chronic hepatitis C. PubMed DOI

Rahman, S. R. et al. Integrins as a drug target in liver fibrosis. PubMed DOI

Von Mühlen, C. et al. Non-muscle myosin as target antigen for human autoantibodies in patients with hepatitis C virus‐associated chronic liver diseases. PubMed DOI PMC

Arif, E. et al. Targeting myosin 1c inhibits murine hepatic fibrogenesis. PubMed PMC

Orlicky, D. J. et al. Perilipin-2 promotes obesity and progressive fatty liver disease in mice through mechanistically distinct hepatocyte and extra-hepatocyte actions. PubMed DOI PMC

Piras, I. S. et al. Hepatic PEMT expression decreases with increasing NAFLD severity. PubMed DOI PMC

Shinomiya, H. Plastin family of actin-bundling proteins: its functions in leukocytes, neurons, intestines, and cancer. PubMed PMC

Zhai, S. Y. et al. Scinderin is a potential prognostic biomarker and correlated with immunological regulation: from pan-cancer analysis to liver hepatocellular carcinoma. PubMed DOI PMC

Wang, X. & Luo, L. X. New targets for cancer promotion and therapy in gliomas: Scinderin. PubMed PMC

Chen, X. M. et al. Suppression of Scinderin modulates epithelial-mesenchymal transition markers in highly metastatic gastric cancer cell line SGC-7901. PubMed DOI

Fu, D. Z., Cheng, Y., He, H., Liu, H. Y. & Liu, Y. F. PDCD5 expression predicts a favorable outcome in patients with hepatocellular carcinoma. PubMed DOI

Han, X. R., Sun, Y. & Bai, X. Z. The anti-tumor role and mechanism of integrated and truncated PDCD5 proteins in osteosarcoma cells. PubMed DOI

Qiao, L. et al. Hepatic deficiency of Selenoprotein S exacerbates hepatic steatosis and insulin resistance. PubMed DOI PMC

Zheng, X. X. et al. Selenoprotein F knockout leads to glucose and lipid metabolism disorders in mice. PubMed DOI

Gustavsson, C. et al. Sex-Different hepatic glycogen content and glucose output in rats. PubMed PMC

Liberti, M. V. & Locasale, J. W. The Warburg effect: how does it benefit cancer cells? PubMed DOI PMC

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