Most cited article - PubMed ID 20943145
Phylogenetic relationships in European Ceriporiopsis species inferred from nuclear and mitochondrial ribosomal DNA sequences
The monotypic "bulbilliferous hyphomycete" genus Taxomyces was erected in 1993 for a fungal endophyte isolated from the Yew tree Taxus brevifolia and named Taxomyces andreanae. This fungus was reported to produce the plant-derived anti-cancer drug taxol. The original description of the fungus was not conclusive as to its taxonomic position because no sporulation or other salient morphological features were reported. Consequently, the taxonomic affinities of this fungus have remained obscure. However, a full genome sequence of this strain was generated by a German research group in 2013, in an unsuccessful attempt to detect the biosynthesis genes encoding for taxol. This prompted us to search for phylogenetic marker genes and compare those with the data that recently have become available from state-of-the-art polyphasic taxonomic studies. Surprisingly, the strain turned out to belong to the phlebioid clade of wood-destroying Basidiomycota as inferred from a comparison of its partial ITS, the 28S rDNA (LSU), the RNA polymerase II largest subunit (rpb1), the RNA polymerase II second largest subunit (rpb2), and the translation elongation factor 1-α (tef1) sequences. A multi gene genealogy based on these loci revealed that the closest relative is Ceriporiopsis (syn. Mycoacia) gilvescens. Even though such wood-destroying Basidiomycota are regularly encountered among the endophytic isolates after surface-disinfection of plant organs, the vast majority of the reported endophytic fungi belong to the Ascomycota. Nevertheless, the data available now allow for synonymizing Taxomyces with Ceriporiopsis, and the necessary new combination is made.
- Keywords
- Ceriporiopsis, Endophytic fungi, Genome mining, New taxon, Phylogeny,
- Publication type
- Letter MeSH
Junghuhnia is a genus of polypores traditionally characterised by a dimitic hyphal system with clamped generative hyphae and presence of encrusted skeletocystidia. However, recent molecular studies revealed that Junghuhnia is polyphyletic and most of the species cluster with Steccherinum, a morphologically similar genus separated only by a hydnoid hymenophore. In the Neotropics, very little is known about the evolutionary relationships of Junghuhnia s.lat. taxa and very few species have been included in molecular studies. In order to test the proper phylogenetic placement of Neotropical species of this group, morphological and molecular analyses were carried out. Specimens were collected in Brazil and used for DNA sequence analyses of the internal transcribed spacer and the large subunit of the nuclear ribosomal RNA gene, the translation elongation factor 1-α gene, and the second largest subunit of RNA polymerase II gene. Herbarium collections, including type specimens, were studied for morphological comparison and to confirm the identity of collections. The molecular data obtained revealed that the studied species are placed in three different genera. Specimens of Junghuhnia carneola represent two distinct species that group in a lineage within the phlebioid clade, separated from Junghuhnia and Steccherinum, which belong to the residual polyporoid clade. Therefore, the new genus Geesterania is proposed including two species, G. carneola comb. nov. and G. davidii sp. nov. Neotropical specimens identified as Junghuhnia nitida represent a different lineage from the European species and are described as Steccherinum neonitidum sp. nov. In addition, the new combinations Steccherinum meridionale, Steccherinum polycystidiferum and Steccherinum undigerum, as well as the new name Flaviporus tenuis, are proposed.
- Keywords
- Mycodiversity, Steccherinaceae, phylogeny, taxonomy,
- Publication type
- Journal Article MeSH
The family Nigrofomitaceae has been considered to be a member of Polyporales and a synonym of Polyporaceae for a long time. However, no molecular evidence supports this taxonomic opinion. For the first time, Nigrofomitaceae is included in a phylogenetic analysis, which shows that this family is separated from Polyporales and nested within Hymenochaetales as a distinct lineage from four well-known families, viz. Hymenochaetaceae, Neoantrodiellaceae, Oxyporaceae and Schizoporaceae. Therefore, Nigrofomitaceae is treated as the fifth family of Hymenochaetales. Nigrofomes melanoporus, the type species of Nigrofomitaceae, was considered to have a pantropical distribution. However, from both morphological and phylogenetic perspectives, the Chinese specimens labelled as N. melanoporus are found not to be conspecific with the specimens of N. melanoporus from Costa Rica, close to the type locality in Cuba. These Chinese specimens are thus described as a new species Nigrofomes sinomelanoporus. The species diversity of Nigrofomes in pantropical region is discussed.
- Keywords
- Polyporales, pantropical distribution, taxonomy, wood-inhabiting fungus,
- Publication type
- Journal Article MeSH