Nejvíce citovaný článek - PubMed ID 30232219
CANCERTOOL: A Visualization and Representation Interface to Exploit Cancer Datasets
The dysregulation of gene expression is an enabling hallmark of cancer. Computational analysis of transcriptomics data from human cancer specimens, complemented with exhaustive clinical annotation, provides an opportunity to identify core regulators of the tumorigenic process. Here we exploit well-annotated clinical datasets of prostate cancer for the discovery of transcriptional regulators relevant to prostate cancer. Following this rationale, we identify Microphthalmia-associated transcription factor (MITF) as a prostate tumor suppressor among a subset of transcription factors. Importantly, we further interrogate transcriptomics and clinical data to refine MITF perturbation-based empirical assays and unveil Crystallin Alpha B (CRYAB) as an unprecedented direct target of the transcription factor that is, at least in part, responsible for its tumor-suppressive activity in prostate cancer. This evidence was supported by the enhanced prognostic potential of a signature based on the concomitant alteration of MITF and CRYAB in prostate cancer patients. In sum, our study provides proof-of-concept evidence of the potential of the bioinformatics screen of publicly available cancer patient databases as discovery platforms, and demonstrates that the MITF-CRYAB axis controls prostate cancer biology.
- MeSH
- alfa-krystaliny - řetězec B genetika MeSH
- buňky PC-3 MeSH
- lidé MeSH
- myši nahé MeSH
- myši MeSH
- nádorové buněčné linie MeSH
- nádorové supresorové proteiny genetika MeSH
- nádory prostaty genetika patologie MeSH
- prognóza MeSH
- regulace genové exprese u nádorů genetika MeSH
- transkripční faktor spojený s mikroftalmií genetika MeSH
- transkripční faktory genetika MeSH
- transkriptom genetika MeSH
- výpočetní biologie metody MeSH
- zvířata MeSH
- Check Tag
- lidé MeSH
- mužské pohlaví MeSH
- myši MeSH
- zvířata MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Názvy látek
- alfa-krystaliny - řetězec B MeSH
- MITF protein, human MeSH Prohlížeč
- nádorové supresorové proteiny MeSH
- transkripční faktor spojený s mikroftalmií MeSH
- transkripční faktory MeSH