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Performance of the DFT-D method, paired with the PCM implicit solvation model, for the computation of interaction energies of solvated complexes of biological interest
KE. Riley, J. Vondrášek, P. Hobza
Jazyk angličtina Země Velká Británie
- MeSH
- algoritmy MeSH
- biologické modely MeSH
- chemické modely MeSH
- DNA chemie MeSH
- hydrofobní a hydrofilní interakce MeSH
- kvantová teorie MeSH
- makromolekulární látky chemie MeSH
- povrchové vlastnosti MeSH
- přenos energie MeSH
- proteiny chemie MeSH
- RNA chemie MeSH
- rozpustnost MeSH
- roztoky MeSH
- termodynamika MeSH
- vodíková vazba MeSH
In this work we investigate the performance of the DFT method, augmented with an empirical dispersion function (DFT-D), paired with the PCM implicit solvation model, for the computation of noncovalent interaction energies of biologically-relevant, solvated model complexes. It is found that this method describes intermolecular interactions within water and ether (protein-like) environments with roughly the same accuracy as in the gas phase. Another important finding is that, when environmental effects are taken into account, the empirical dispersion term associated with the DFT-D method need be modified very little (or not at all), in order to obtain the optimum, most well balanced, performance.
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- $a Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nam. 2, 166 10, Prague 6, Czech Republic.
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- $a In this work we investigate the performance of the DFT method, augmented with an empirical dispersion function (DFT-D), paired with the PCM implicit solvation model, for the computation of noncovalent interaction energies of biologically-relevant, solvated model complexes. It is found that this method describes intermolecular interactions within water and ether (protein-like) environments with roughly the same accuracy as in the gas phase. Another important finding is that, when environmental effects are taken into account, the empirical dispersion term associated with the DFT-D method need be modified very little (or not at all), in order to obtain the optimum, most well balanced, performance.
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