-
Je něco špatně v tomto záznamu ?
Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels
A. Stsiapanava, J. Dohnalek, JA. Gavira, M. Kuty, T. Koudelakova, J. Damborsky, I. Kuta Smatanova,
Jazyk angličtina Země Anglie, Velká Británie
Typ dokumentu časopisecké články, práce podpořená grantem
- MeSH
- hydrolasy chemie genetika MeSH
- izoenzymy chemie genetika MeSH
- krystalografie rentgenová MeSH
- ligandy MeSH
- molekulární modely MeSH
- mutace MeSH
- proteinové inženýrství MeSH
- Rhodococcus enzymologie MeSH
- terciární struktura proteinů MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
The haloalkane dehalogenase DhaA from Rhodococcus rhodochrous NCIMB 13064 is a bacterial enzyme that shows catalytic activity for the hydrolytic degradation of the highly toxic industrial pollutant 1,2,3-trichloropropane (TCP). Mutagenesis focused on the access tunnels of DhaA produced protein variants with significantly improved activity towards TCP. Three mutants of DhaA named DhaA04 (C176Y), DhaA14 (I135F) and DhaA15 (C176Y + I135F) were constructed in order to study the functional relevance of the tunnels connecting the buried active site of the protein with the surrounding solvent. All three protein variants were crystallized using the sitting-drop vapour-diffusion technique. The crystals of DhaA04 belonged to the orthorhombic space group P2(1)2(1)2(1), while the crystals of DhaA14 and DhaA15 had triclinic symmetry in space group P1. The crystal structures of DhaA04, DhaA14 and DhaA15 with ligands present in the active site were solved and refined using diffraction data to 1.23, 0.95 and 1.22 A, resolution, respectively. Structural comparisons of the wild type and the three mutants suggest that the tunnels play a key role in the processes of ligand exchange between the buried active site and the surrounding solvent.
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc12026112
- 003
- CZ-PrNML
- 005
- 20121206103133.0
- 007
- ta
- 008
- 120817e20100813enk f 000 0#eng||
- 009
- AR
- 024 7_
- $a 10.1107/s0907444910027101 $2 doi
- 035 __
- $a (PubMed)20823547
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a enk
- 100 1_
- $a Stsiapanava, A $u Institute of Physical Biology, University of South Bohemia, Nove Hrady, Czech Republic.
- 245 10
- $a Atomic resolution studies of haloalkane dehalogenases DhaA04, DhaA14 and DhaA15 with engineered access tunnels / $c A. Stsiapanava, J. Dohnalek, JA. Gavira, M. Kuty, T. Koudelakova, J. Damborsky, I. Kuta Smatanova,
- 520 9_
- $a The haloalkane dehalogenase DhaA from Rhodococcus rhodochrous NCIMB 13064 is a bacterial enzyme that shows catalytic activity for the hydrolytic degradation of the highly toxic industrial pollutant 1,2,3-trichloropropane (TCP). Mutagenesis focused on the access tunnels of DhaA produced protein variants with significantly improved activity towards TCP. Three mutants of DhaA named DhaA04 (C176Y), DhaA14 (I135F) and DhaA15 (C176Y + I135F) were constructed in order to study the functional relevance of the tunnels connecting the buried active site of the protein with the surrounding solvent. All three protein variants were crystallized using the sitting-drop vapour-diffusion technique. The crystals of DhaA04 belonged to the orthorhombic space group P2(1)2(1)2(1), while the crystals of DhaA14 and DhaA15 had triclinic symmetry in space group P1. The crystal structures of DhaA04, DhaA14 and DhaA15 with ligands present in the active site were solved and refined using diffraction data to 1.23, 0.95 and 1.22 A, resolution, respectively. Structural comparisons of the wild type and the three mutants suggest that the tunnels play a key role in the processes of ligand exchange between the buried active site and the surrounding solvent.
- 650 _2
- $a krystalografie rentgenová $7 D018360
- 650 _2
- $a hydrolasy $x chemie $x genetika $7 D006867
- 650 _2
- $a izoenzymy $x chemie $x genetika $7 D007527
- 650 _2
- $a ligandy $7 D008024
- 650 _2
- $a molekulární modely $7 D008958
- 650 _2
- $a mutace $7 D009154
- 650 _2
- $a proteinové inženýrství $7 D015202
- 650 _2
- $a terciární struktura proteinů $7 D017434
- 650 _2
- $a Rhodococcus $x enzymologie $7 D012240
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Dohnalek, J
- 700 1_
- $a Gavira, J A
- 700 1_
- $a Kuty, M
- 700 1_
- $a Koudelakova, T
- 700 1_
- $a Damborsky, J
- 700 1_
- $a Kuta Smatanova, I
- 773 0_
- $w MED00179510 $t Acta crystallographica. Section D, Biological crystallography $x 1399-0047 $g Roč. 66, č. Pt 9 (20100813), s. 962-9
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/20823547 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y m
- 990 __
- $a 20120817 $b ABA008
- 991 __
- $a 20121206103207 $b ABA008
- 999 __
- $a ok $b bmc $g 948154 $s 783458
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2010 $b 66 $c Pt 9 $d 962-9 $e 20100813 $i 1399-0047 $m Acta crystallographica. Section D, Biological crystallography $n Acta Crystallogr D Biol Crystallogr $x MED00179510
- LZP __
- $a Pubmed-20120817/10/04