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Distinct microbial communities associated with buried soils in the Siberian tundra
A. Gittel, J. Bárta, I. Kohoutová, R. Mikutta, S. Owens, J. Gilbert, J. Schnecker, B. Wild, B. Hannisdal, J. Maerz, N. Lashchinskiy, P. Capek, H. Santrůčková, N. Gentsch, O. Shibistova, G. Guggenberger, A. Richter, VL. Torsvik, C. Schleper, T. Urich,
Language English Country England, Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
NLK
PubMed Central
from 2011
Europe PubMed Central
from 2011 to 1 year ago
ProQuest Central
from 2007-05-01 to 1 year ago
Medline Complete (EBSCOhost)
from 2007-05-01 to 2015-12-31
Health & Medicine (ProQuest)
from 2007-05-01 to 1 year ago
Oxford Journals Open Access Collection
from 2007
ROAD: Directory of Open Access Scholarly Resources
from 2007
- MeSH
- Archaea classification genetics physiology MeSH
- Bacteria classification genetics MeSH
- Biodiversity * MeSH
- Ecosystem * MeSH
- Enzymes metabolism MeSH
- Bacterial Physiological Phenomena * MeSH
- Genes, rRNA genetics MeSH
- Fungi classification genetics physiology MeSH
- DNA, Ribosomal Spacer genetics MeSH
- Soil chemistry MeSH
- Soil Microbiology * MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
- Geographicals
- Siberia MeSH
Cryoturbation, the burial of topsoil material into deeper soil horizons by repeated freeze-thaw events, is an important storage mechanism for soil organic matter (SOM) in permafrost-affected soils. Besides abiotic conditions, microbial community structure and the accessibility of SOM to the decomposer community are hypothesized to control SOM decomposition and thus have a crucial role in SOM accumulation in buried soils. We surveyed the microbial community structure in cryoturbated soils from nine soil profiles in the northeastern Siberian tundra using high-throughput sequencing and quantification of bacterial, archaeal and fungal marker genes. We found that bacterial abundances in buried topsoils were as high as in unburied topsoils. In contrast, fungal abundances decreased with depth and were significantly lower in buried than in unburied topsoils resulting in remarkably low fungal to bacterial ratios in buried topsoils. Fungal community profiling revealed an associated decrease in presumably ectomycorrhizal (ECM) fungi. The abiotic conditions (low to subzero temperatures, anoxia) and the reduced abundance of fungi likely provide a niche for bacterial, facultative anaerobic decomposers of SOM such as members of the Actinobacteria, which were found in significantly higher relative abundances in buried than in unburied topsoils. Our study expands the knowledge on the microbial community structure in soils of Northern latitude permafrost regions, and attributes the delayed decomposition of SOM in buried soils to specific microbial taxa, and particularly to a decrease in abundance and activity of ECM fungi, and to the extent to which bacterial decomposers are able to act as their functional substitutes.
Central Siberian Botanical Garden Siberian Branch of Russian Academy of Sciences Novosibirsk Russia
Department of Biology Centre for Geobiology University of Bergen Bergen Norway
Department of Earth Science Centre for Geobiology University of Bergen Bergen Norway
Department of Ecosystems Biology University of South Bohemia České Budějovice Czech Republic
Institut für Bodenkunde Leibniz Universität Hannover Hannover Germany
References provided by Crossref.org
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- $a Cryoturbation, the burial of topsoil material into deeper soil horizons by repeated freeze-thaw events, is an important storage mechanism for soil organic matter (SOM) in permafrost-affected soils. Besides abiotic conditions, microbial community structure and the accessibility of SOM to the decomposer community are hypothesized to control SOM decomposition and thus have a crucial role in SOM accumulation in buried soils. We surveyed the microbial community structure in cryoturbated soils from nine soil profiles in the northeastern Siberian tundra using high-throughput sequencing and quantification of bacterial, archaeal and fungal marker genes. We found that bacterial abundances in buried topsoils were as high as in unburied topsoils. In contrast, fungal abundances decreased with depth and were significantly lower in buried than in unburied topsoils resulting in remarkably low fungal to bacterial ratios in buried topsoils. Fungal community profiling revealed an associated decrease in presumably ectomycorrhizal (ECM) fungi. The abiotic conditions (low to subzero temperatures, anoxia) and the reduced abundance of fungi likely provide a niche for bacterial, facultative anaerobic decomposers of SOM such as members of the Actinobacteria, which were found in significantly higher relative abundances in buried than in unburied topsoils. Our study expands the knowledge on the microbial community structure in soils of Northern latitude permafrost regions, and attributes the delayed decomposition of SOM in buried soils to specific microbial taxa, and particularly to a decrease in abundance and activity of ECM fungi, and to the extent to which bacterial decomposers are able to act as their functional substitutes.
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