-
Je něco špatně v tomto záznamu ?
Classification of strain CCM 4446T as Rhodococcus degradans sp. nov
P. Švec, J. Černohlávková, HJ. Busse, H. Vojtková, R. Pantůček, M. Cnockaert, I. Mašlaňová, S. Králová, P. Vandamme, I. Sedláček,
Jazyk angličtina Země Anglie, Velká Británie
Typ dokumentu časopisecké články, práce podpořená grantem
NLK
Free Medical Journals
od 1951 do Před 2 roky
Freely Accessible Science Journals
od 2000 do Před 1 rokem
PubMed
26385412
DOI
10.1099/ijsem.0.000584
Knihovny.cz E-zdroje
- MeSH
- bakteriální geny MeSH
- DNA bakterií genetika MeSH
- fosfolipidy chemie MeSH
- fylogeneze * MeSH
- hybridizace nukleových kyselin MeSH
- kyselina diaminopimelová chemie MeSH
- kyseliny mykolové chemie MeSH
- mastné kyseliny chemie MeSH
- molekulární sekvence - údaje MeSH
- peptidoglykan chemie MeSH
- polyaminy chemie MeSH
- půdní mikrobiologie * MeSH
- Rhodococcus klasifikace genetika izolace a purifikace MeSH
- ribotypizace MeSH
- RNA ribozomální 16S genetika MeSH
- sekvenční analýza DNA MeSH
- techniky typizace bakterií MeSH
- vitamin K 2 chemie MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Geografické názvy
- Švýcarsko MeSH
Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA-DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T ( = LMG 28633T).
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc16020280
- 003
- CZ-PrNML
- 005
- 20160728105454.0
- 007
- ta
- 008
- 160722s2015 enk f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1099/ijsem.0.000584 $2 doi
- 024 7_
- $a 10.1099/ijsem.0.000584 $2 doi
- 035 __
- $a (PubMed)26385412
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a enk
- 100 1_
- $a Švec, Pavel $u 1Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Bld. A25, 625 00 Brno, Czech Republic.
- 245 10
- $a Classification of strain CCM 4446T as Rhodococcus degradans sp. nov / $c P. Švec, J. Černohlávková, HJ. Busse, H. Vojtková, R. Pantůček, M. Cnockaert, I. Mašlaňová, S. Králová, P. Vandamme, I. Sedláček,
- 520 9_
- $a Strain CCM 4446T, with notable biodegradation capabilities, was investigated in this study in order to elucidate its taxonomic position. Chemotaxonomic analyses of quinones, polar lipids, mycolic acids, polyamines and the diamino acid of the cell-wall peptidoglycan corresponded with characteristics of the genus Rhodococcus. Phylogenetic analysis, based on the 16S rRNA gene sequence, assigned strain CCM 4446T to the genus Rhodococcus and placed it in the Rhodococcus erythropolis 16S rRNA gene clade. Further analysis of catA and gyrB gene sequences, automated ribotyping with EcoRI restriction endonuclease, whole-cell protein profiling, DNA-DNA hybridization and extensive biotyping enabled differentiation of strain CCM 4446T from all phylogenetically closely related species, i.e., Rhodococcus baikonurensis, Rhodococcus qingshengii, Rhodococcus erythropolis and Rhodococcus globerulus. The results obtained show that the strain investigated represents a novel species within the genus Rhodococcus, for which the name Rhodococcus degradans sp. nov., is proposed. The type strain is CCM 4446T ( = LMG 28633T).
- 650 _2
- $a techniky typizace bakterií $7 D015373
- 650 _2
- $a DNA bakterií $x genetika $7 D004269
- 650 _2
- $a kyselina diaminopimelová $x chemie $7 D003960
- 650 _2
- $a mastné kyseliny $x chemie $7 D005227
- 650 _2
- $a bakteriální geny $7 D005798
- 650 _2
- $a molekulární sekvence - údaje $7 D008969
- 650 _2
- $a kyseliny mykolové $x chemie $7 D009171
- 650 _2
- $a hybridizace nukleových kyselin $7 D009693
- 650 _2
- $a peptidoglykan $x chemie $7 D010457
- 650 _2
- $a fosfolipidy $x chemie $7 D010743
- 650 12
- $a fylogeneze $7 D010802
- 650 _2
- $a polyaminy $x chemie $7 D011073
- 650 _2
- $a RNA ribozomální 16S $x genetika $7 D012336
- 650 _2
- $a Rhodococcus $x klasifikace $x genetika $x izolace a purifikace $7 D012240
- 650 _2
- $a ribotypizace $7 D021521
- 650 _2
- $a sekvenční analýza DNA $7 D017422
- 650 12
- $a půdní mikrobiologie $7 D012988
- 650 _2
- $a vitamin K 2 $x chemie $7 D024482
- 651 _2
- $a Švýcarsko $7 D013557
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Černohlávková, Jitka $u 1Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Bld. A25, 625 00 Brno, Czech Republic.
- 700 1_
- $a Busse, Hans-Jürgen $u 2Institute for Microbiology, Veterinary University Vienna, Veterinärplatz 1, A-1210 Vienna, Austria.
- 700 1_
- $a Vojtková, Hana $u 3Faculty of Mining and Geology, Institute of Environmental Engineering, VŠB-Technical University of Ostrava, 17. listopadu 15/2172, 708 33 Ostrava-Poruba, Czech Republic.
- 700 1_
- $a Pantůček, Roman $u 4Division of Genetics and Molecular Biology, Department of Experimental Biology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
- 700 1_
- $a Cnockaert, Margo $u 5Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium.
- 700 1_
- $a Mašlaňová, Ivana $u 4Division of Genetics and Molecular Biology, Department of Experimental Biology, Faculty of Science, Masaryk University, Kotlářská 2, 611 37 Brno, Czech Republic.
- 700 1_
- $a Králová, Stanislava $u 1Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Bld. A25, 625 00 Brno, Czech Republic.
- 700 1_
- $a Vandamme, Peter $u 5Department of Biochemistry and Microbiology, Faculty of Sciences, Ghent University, K.L. Ledeganckstraat 35, 9000 Ghent, Belgium.
- 700 1_
- $a Sedláček, Ivo $u 1Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Kamenice 5, Bld. A25, 625 00 Brno, Czech Republic.
- 773 0_
- $w MED00006002 $t International journal of systematic and evolutionary microbiology $x 1466-5034 $g Roč. 65, č. 12 (2015), s. 4381-7
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/26385412 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20160722 $b ABA008
- 991 __
- $a 20160728105716 $b ABA008
- 999 __
- $a ok $b bmc $g 1154950 $s 944808
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2015 $b 65 $c 12 $d 4381-7 $e 20150918 $i 1466-5034 $m International journal of systematic and evolutionary microbiology $n Int. j. syst. evol. microbiol. (Print) $x MED00006002
- LZP __
- $a Pubmed-20160722
