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High-Throughput Immunogenetics for Clinical and Research Applications in Immunohematology: Potential and Challenges
AW. Langerak, M. Brüggemann, F. Davi, N. Darzentas, JJM. van Dongen, D. Gonzalez, G. Cazzaniga, V. Giudicelli, MP. Lefranc, M. Giraud, EA. Macintyre, M. Hummel, C. Pott, PJTA. Groenen, K. Stamatopoulos, . ,
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články
NLK
Free Medical Journals
od 1998 do Před 1 rokem
Freely Accessible Science Journals
od 1998-01-01 do Před 1 rokem
Open Access Digital Library
od 1998-01-01
PubMed
28416603
DOI
10.4049/jimmunol.1602050
Knihovny.cz E-zdroje
- MeSH
- alely MeSH
- genová přestavba MeSH
- geny pro imunoglobuliny MeSH
- geny TcR genetika MeSH
- hematologie metody MeSH
- imunogenetika metody normy MeSH
- imunologické techniky * MeSH
- lidé MeSH
- výpočetní biologie metody MeSH
- vysoce účinné nukleotidové sekvenování * metody MeSH
- Check Tag
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
Analysis and interpretation of Ig and TCR gene rearrangements in the conventional, low-throughput way have their limitations in terms of resolution, coverage, and biases. With the advent of high-throughput, next-generation sequencing (NGS) technologies, a deeper analysis of Ig and/or TCR (IG/TR) gene rearrangements is now within reach, which impacts on all main applications of IG/TR immunogenetic analysis. To bridge the generation gap from low- to high-throughput analysis, the EuroClonality-NGS Consortium has been formed, with the main objectives to develop, standardize, and validate the entire workflow of IG/TR NGS assays for 1) clonality assessment, 2) minimal residual disease detection, and 3) repertoire analysis. This concerns the preanalytical (sample preparation, target choice), analytical (amplification, NGS), and postanalytical (immunoinformatics) phases. Here we critically discuss pitfalls and challenges of IG/TR NGS methodology and its applications in hemato-oncology and immunology.
2nd Medical Department University Hospital Schleswig Holstein 24105 Kiel Germany
Centro Ricerca Tettamanti Clinica Pediatrica Università Milano Bicocca 20900 Monza Italy
Department of Pathology Radboud University Nijmegen Medical Center 6525 GA Nijmegen the Netherlands
Institut für Pathologie Charité Universitätsmedizin Berlin D 10117 Berlin Germany
UMR 9002 CNRS Université de Montpellier 34396 Montpellier France
Citace poskytuje Crossref.org
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