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Global phylogeography and evolutionary history of Shigella dysenteriae type 1
E. Njamkepo, N. Fawal, A. Tran-Dien, J. Hawkey, N. Strockbine, C. Jenkins, KA. Talukder, R. Bercion, K. Kuleshov, R. Kolínská, JE. Russell, L. Kaftyreva, M. Accou-Demartin, A. Karas, O. Vandenberg, AE. Mather, CJ. Mason, AJ. Page, T. Ramamurthy,...
Jazyk angličtina Země Velká Británie
Typ dokumentu historické články, časopisecké články
- MeSH
- bacilární dyzentérie epidemiologie dějiny mikrobiologie MeSH
- bakteriální léková rezistence MeSH
- celosvětové zdraví MeSH
- dějiny 19. století MeSH
- dějiny 20. století MeSH
- dějiny 21. století MeSH
- fylogeografie * MeSH
- genom bakteriální MeSH
- lidé MeSH
- molekulární epidemiologie MeSH
- molekulární evoluce * MeSH
- sekvenční analýza DNA MeSH
- séroskupina * MeSH
- Shigella dysenteriae klasifikace genetika izolace a purifikace MeSH
- Check Tag
- dějiny 19. století MeSH
- dějiny 20. století MeSH
- dějiny 21. století MeSH
- lidé MeSH
- Publikační typ
- časopisecké články MeSH
- historické články MeSH
Together with plague, smallpox and typhus, epidemics of dysentery have been a major scourge of human populations for centuries(1). A previous genomic study concluded that Shigella dysenteriae type 1 (Sd1), the epidemic dysentery bacillus, emerged and spread worldwide after the First World War, with no clear pattern of transmission(2). This is not consistent with the massive cyclic dysentery epidemics reported in Europe during the eighteenth and nineteenth centuries(1,3,4) and the first isolation of Sd1 in Japan in 1897(5). Here, we report a whole-genome analysis of 331 Sd1 isolates from around the world, collected between 1915 and 2011, providing us with unprecedented insight into the historical spread of this pathogen. We show here that Sd1 has existed since at least the eighteenth century and that it swept the globe at the end of the nineteenth century, diversifying into distinct lineages associated with the First World War, Second World War and various conflicts or natural disasters across Africa, Asia and Central America. We also provide a unique historical perspective on the evolution of antibiotic resistance over a 100-year period, beginning decades before the antibiotic era, and identify a prevalent multiple antibiotic-resistant lineage in South Asia that was transmitted in several waves to Africa, where it caused severe outbreaks of disease.
Armed Forces Research Institute of Medical Sciences Bangkok 10400 Thailand
Bacterial Diseases Branch Walter Reed Army Institute of Research Silver Spring Maryland 20910 USA
Biology Department and Infection Control Unit Bégin Military Hospital 94160 Saint Mandé France
Center of Research and Diagnostics Centers for Disease Control Taichung 40855 Taiwan
Central Laboratories Ministry of Health Jerusalem 91342 Israel
Centre Pasteur du Cameroun BP 1274 Yaoundé Cameroon
Department of Bacteriology 1 National Institute of Infectious Diseases Tokyo 162 8640 Japan
Department of Foodborne Infections Norwegian Institute of Public Health Nydalen 0403 Oslo Norway
Department of Medical Microbiology University of KwaZulu Natal Durban 4041 South Africa
Divison of Enteropathogenic Bacteria and Legionella Robert Koch Institut 38855 Wernigerode Germany
Faculty of Medicine Hebrew University of Jerusalem Jerusalem 91120 Israel
Federal Budget Institute of Science Central Research Institute for Epidemiology Moscow 111123 Russia
icddr b Enteric and Food Microbiology Laboratory Dhaka 1212 Bangladesh
INSERM IAME UMR 1137 Univ Paris Diderot IAME UMR 1137 Sorbonne Paris Cité 75018 Paris France
Institut für Hygiene und Umwelt 20539 Hamburg Germany
Institut Pasteur Bioinformatics platform 75724 Paris Cedex 15 France
Institut Pasteur Collection de l'Institut Pasteur 75724 Paris Cedex 15 France
Institut Pasteur de Dakar BP 220 Dakar Senegal
Institut Pasteur Genotyping of Pathogens and Public Health Platform 75724 Paris Cedex 15 France
Institut Pasteur Plate forme Génomique 75724 Paris Cedex 15 France
Institut Pasteur Unité de Pathogénie Microbienne Moléculaire 75724 Paris Cedex 15 France
Institut Pasteur Unité des Bactéries Pathogènes Entériques 75724 Paris Cedex 15 France
National Institute of Cholera and Enteric Diseases Kolkata West Bengal 700010 India
National Microbiology Laboratory Public Health Agency of Canada Winnipeg Manitoba R3E 3R2 Canada
Pasteur Institute of St Petersburg St Petersburg 197101 Russia
Public Health Agency of Sweden 17182 Solna Sweden
Public Health England Gastrointestinal Bacteria Reference Unit Colindale NW9 5HT UK
Public Health England National Collection of Type Cultures Porton Down SP4 0JG UK
Citace poskytuje Crossref.org
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