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The plastid genome of some eustigmatophyte algae harbours a bacteria-derived six-gene cluster for biosynthesis of a novel secondary metabolite
T. Yurchenko, T. Ševčíková, H. Strnad, A. Butenko, M. Eliáš,
Language English Country Great Britain
Document type Journal Article, Research Support, Non-U.S. Gov't
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PubMed
27906133
DOI
10.1098/rsob.160249
Knihovny.cz E-resources
- MeSH
- Molecular Sequence Annotation MeSH
- Genes, Bacterial MeSH
- DNA, Algal genetics MeSH
- Genome, Plastid * MeSH
- Stramenopiles genetics MeSH
- Evolution, Molecular MeSH
- Multigene Family MeSH
- Gene Transfer, Horizontal * MeSH
- Sequence Analysis, DNA methods MeSH
- Publication type
- Journal Article MeSH
- Research Support, Non-U.S. Gov't MeSH
Acquisition of genes by plastid genomes (plastomes) via horizontal gene transfer (HGT) seems to be a rare phenomenon. Here, we report an interesting case of HGT revealed by sequencing the plastomes of the eustigmatophyte algae Monodopsis sp. MarTras21 and Vischeria sp. CAUP Q 202. These plastomes proved to harbour a unique cluster of six genes, most probably acquired from a bacterium of the phylum Bacteroidetes, with homologues in various bacteria, typically organized in a conserved uncharacterized putative operon. Sequence analyses of the six proteins encoded by the operon yielded the following annotation for them: (i) a novel family without discernible homologues; (ii) a new family within the superfamily of metallo-dependent hydrolases; (iii) a novel subgroup of the UbiA superfamily of prenyl transferases; (iv) a new clade within the sugar phosphate cyclase superfamily; (v) a new family within the xylose isomerase-like superfamily; and (vi) a hydrolase for a phosphate moiety-containing substrate. We suggest that the operon encodes enzymes of a pathway synthesizing an isoprenoid-cyclitol-derived compound, possibly an antimicrobial or other protective substance. To the best of our knowledge, this is the first report of an expansion of the metabolic capacity of a plastid mediated by HGT into the plastid genome.
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