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ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data

V. Bystry, T. Reigl, A. Krejci, M. Demko, B. Hanakova, A. Grioni, H. Knecht, M. Schlitt, P. Dreger, L. Sellner, D. Herrmann, M. Pingeon, M. Boudjoghra, J. Rijntjes, C. Pott, AW. Langerak, PJTA. Groenen, F. Davi, M. Brüggemann, N. Darzentas, . ,

. 2017 ; 33 (3) : 435-437.

Jazyk angličtina Země Anglie, Velká Británie

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/bmc18034003

Grantová podpora
NV16-34272A MZ0 CEP - Centrální evidence projektů

Motivation: The study of immunoglobulins and T cell receptors using next-generation sequencing has finally allowed exploring immune repertoires and responses in their immense variability and complexity. Unsurprisingly, their analysis and interpretation is a highly convoluted task. Results: We thus implemented ARResT/Interrogate, a web-based, interactive application. It can organize and filter large amounts of immunogenetic data by numerous criteria, calculate several relevant statistics, and present results in the form of multiple interconnected visualizations. Availability and Implementation: ARResT/Interrogate is implemented primarily in R, and is freely available at http://bat.infspire.org/arrest/interrogate/ Contact: nikos.darzentas@gmail.com Supplementary Information: Supplementary data are available at Bioinformatics online.

Citace poskytuje Crossref.org

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