Detail
Article
Online article
FT
Medvik - BMC
  • Something wrong with this record ?

SugarSketcher: Quick and Intuitive Online Glycan Drawing

D. Alocci, P. Suchánková, R. Costa, N. Hory, J. Mariethoz, RS. Vařeková, P. Toukach, F. Lisacek,

. 2018 ; 23 (12) : . [pub] 20181205

Language English Country Switzerland

Document type Journal Article

SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The "quick mode" allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The "normal mode" integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.

References provided by Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc19012030
003      
CZ-PrNML
005      
20190405101239.0
007      
ta
008      
190405s2018 sz f 000 0|eng||
009      
AR
024    7_
$a 10.3390/molecules23123206 $2 doi
035    __
$a (PubMed)30563078
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a sz
100    1_
$a Alocci, Davide $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. davide.alocci@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. davide.alocci@sib.swiss.
245    10
$a SugarSketcher: Quick and Intuitive Online Glycan Drawing / $c D. Alocci, P. Suchánková, R. Costa, N. Hory, J. Mariethoz, RS. Vařeková, P. Toukach, F. Lisacek,
520    9_
$a SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The "quick mode" allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The "normal mode" integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.
650    _2
$a výpočetní biologie $x metody $7 D019295
650    _2
$a polysacharidy $x chemie $7 D011134
650    12
$a software $7 D012984
650    _2
$a vztahy mezi strukturou a aktivitou $7 D013329
650    12
$a internetový prohlížeč $7 D064878
655    _2
$a časopisecké články $7 D016428
700    1_
$a Suchánková, Pavla $u CEITEC⁻Central European Institute of Technology, Masaryk University Brno, 625 00 Brno-Bohunice, Czech Republic. pavla.suchankova@mail.muni.cz. National Centre for Biomolecular Research, Faculty of Science, 625 00 Brno-Bohunice, Czech Republic. pavla.suchankova@mail.muni.cz.
700    1_
$a Costa, Renaud $u Polytech Nice Sophia, Campus SophiaTech, 06903 Sophia-Antipolis, France. renaud.costa@etu.unice.fr.
700    1_
$a Hory, Nicolas $u Polytech Nice Sophia, Campus SophiaTech, 06903 Sophia-Antipolis, France. horynicolas@yahoo.fr.
700    1_
$a Mariethoz, Julien $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. julien.mariethoz@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. julien.mariethoz@sib.swiss.
700    1_
$a Vařeková, Radka Svobodová $u CEITEC⁻Central European Institute of Technology, Masaryk University Brno, 625 00 Brno-Bohunice, Czech Republic. radka.svobodova@ceitec.muni.cz. National Centre for Biomolecular Research, Faculty of Science, 625 00 Brno-Bohunice, Czech Republic. radka.svobodova@ceitec.muni.cz.
700    1_
$a Toukach, Philip $u Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Laboratory of Carbohydrate Chemistry, 119991 Moscow, Russia. netbox@toukach.ru.
700    1_
$a Lisacek, Frédérique $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss. Section of Biology, University of Geneva, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss.
773    0_
$w MED00180394 $t Molecules (Basel, Switzerland) $x 1420-3049 $g Roč. 23, č. 12 (2018)
856    41
$u https://pubmed.ncbi.nlm.nih.gov/30563078 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y a $z 0
990    __
$a 20190405 $b ABA008
991    __
$a 20190405101248 $b ABA008
999    __
$a ok $b bmc $g 1391340 $s 1050335
BAS    __
$a 3
BAS    __
$a PreBMC
BMC    __
$a 2018 $b 23 $c 12 $e 20181205 $i 1420-3049 $m Molecules $n Molecules $x MED00180394
LZP    __
$a Pubmed-20190405

Find record

Citation metrics

Loading data ...

Archiving options

Loading data ...