-
Something wrong with this record ?
SugarSketcher: Quick and Intuitive Online Glycan Drawing
D. Alocci, P. Suchánková, R. Costa, N. Hory, J. Mariethoz, RS. Vařeková, P. Toukach, F. Lisacek,
Language English Country Switzerland
Document type Journal Article
NLK
Directory of Open Access Journals
from 1997
Free Medical Journals
from 1997
PubMed Central
from 2001
Europe PubMed Central
from 2001
ProQuest Central
from 1997-01-01
Open Access Digital Library
from 1997-01-01
Medline Complete (EBSCOhost)
from 2009-03-01
Health & Medicine (ProQuest)
from 1997-01-01
- MeSH
- Web Browser * MeSH
- Polysaccharides chemistry MeSH
- Software * MeSH
- Computational Biology methods MeSH
- Structure-Activity Relationship MeSH
- Publication type
- Journal Article MeSH
SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The "quick mode" allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The "normal mode" integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc19012030
- 003
- CZ-PrNML
- 005
- 20190405101239.0
- 007
- ta
- 008
- 190405s2018 sz f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.3390/molecules23123206 $2 doi
- 035 __
- $a (PubMed)30563078
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a sz
- 100 1_
- $a Alocci, Davide $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. davide.alocci@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. davide.alocci@sib.swiss.
- 245 10
- $a SugarSketcher: Quick and Intuitive Online Glycan Drawing / $c D. Alocci, P. Suchánková, R. Costa, N. Hory, J. Mariethoz, RS. Vařeková, P. Toukach, F. Lisacek,
- 520 9_
- $a SugarSketcher is an intuitive and fast JavaScript interface module for online drawing of glycan structures in the popular Symbol Nomenclature for Glycans (SNFG) notation and exporting them to various commonly used formats encoding carbohydrate sequences (e.g., GlycoCT) or quality images (e.g., svg). It does not require a backend server or any specific browser plugins and can be integrated in any web glycoinformatics project. SugarSketcher allows drawing glycans both for glycobiologists and non-expert users. The "quick mode" allows a newcomer to build up a glycan structure having only a limited knowledge in carbohydrate chemistry. The "normal mode" integrates advanced options which enable glycobiologists to tailor complex carbohydrate structures. The source code is freely available on GitHub and glycoinformaticians are encouraged to participate in the development process while users are invited to test a prototype available on the ExPASY web-site and send feedback.
- 650 _2
- $a výpočetní biologie $x metody $7 D019295
- 650 _2
- $a polysacharidy $x chemie $7 D011134
- 650 12
- $a software $7 D012984
- 650 _2
- $a vztahy mezi strukturou a aktivitou $7 D013329
- 650 12
- $a internetový prohlížeč $7 D064878
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a Suchánková, Pavla $u CEITEC⁻Central European Institute of Technology, Masaryk University Brno, 625 00 Brno-Bohunice, Czech Republic. pavla.suchankova@mail.muni.cz. National Centre for Biomolecular Research, Faculty of Science, 625 00 Brno-Bohunice, Czech Republic. pavla.suchankova@mail.muni.cz.
- 700 1_
- $a Costa, Renaud $u Polytech Nice Sophia, Campus SophiaTech, 06903 Sophia-Antipolis, France. renaud.costa@etu.unice.fr.
- 700 1_
- $a Hory, Nicolas $u Polytech Nice Sophia, Campus SophiaTech, 06903 Sophia-Antipolis, France. horynicolas@yahoo.fr.
- 700 1_
- $a Mariethoz, Julien $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. julien.mariethoz@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. julien.mariethoz@sib.swiss.
- 700 1_
- $a Vařeková, Radka Svobodová $u CEITEC⁻Central European Institute of Technology, Masaryk University Brno, 625 00 Brno-Bohunice, Czech Republic. radka.svobodova@ceitec.muni.cz. National Centre for Biomolecular Research, Faculty of Science, 625 00 Brno-Bohunice, Czech Republic. radka.svobodova@ceitec.muni.cz.
- 700 1_
- $a Toukach, Philip $u Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Laboratory of Carbohydrate Chemistry, 119991 Moscow, Russia. netbox@toukach.ru.
- 700 1_
- $a Lisacek, Frédérique $u Proteome Informatics Group, SIB Swiss Institute of Bioinformatics, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss. Computer Science Department, University of Geneva, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss. Section of Biology, University of Geneva, 1211 Geneva, Switzerland. frederique.lisacek@sib.swiss.
- 773 0_
- $w MED00180394 $t Molecules (Basel, Switzerland) $x 1420-3049 $g Roč. 23, č. 12 (2018)
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/30563078 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y a $z 0
- 990 __
- $a 20190405 $b ABA008
- 991 __
- $a 20190405101248 $b ABA008
- 999 __
- $a ok $b bmc $g 1391340 $s 1050335
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2018 $b 23 $c 12 $e 20181205 $i 1420-3049 $m Molecules $n Molecules $x MED00180394
- LZP __
- $a Pubmed-20190405