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Novel Structural Mechanism of Allosteric Regulation of Aspartic Peptidases via an Evolutionarily Conserved Exosite

I. Hánová, J. Brynda, R. Houštecká, N. Alam, D. Sojka, P. Kopáček, L. Marešová, J. Vondrášek, M. Horn, O. Schueler-Furman, M. Mareš,

. 2018 ; 25 (3) : 318-329.e4. [pub] 20180127

Language English Country United States

Document type Journal Article, Research Support, Non-U.S. Gov't, Research Support, U.S. Gov't, Non-P.H.S.

Pepsin-family aspartic peptidases are biosynthesized as inactive zymogens in which the propeptide blocks the active site until its proteolytic removal upon enzyme activation. Here, we describe a novel dual regulatory function for the propeptide using a set of crystal structures of the parasite cathepsin D IrCD1. In the IrCD1 zymogen, intramolecular autoinhibition by the intact propeptide is mediated by an evolutionarily conserved exosite on the enzyme core. After activation, the mature enzyme employs the same exosite to rebind a small fragment derived from the cleaved propeptide. This fragment functions as an effective natural inhibitor of mature IrCD1 that operates in a pH-dependent manner through a unique allosteric inhibition mechanism. The study uncovers the propeptide-binding exosite as a target for the regulation of pepsin-family aspartic peptidases and defines the structural requirements for exosite inhibition.

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$a Brynda, Jiří $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic.
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$a Houštecká, Radka $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic; First Faculty of Medicine, Charles University, 12108 Prague, Czech Republic.
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$a Alam, Nawsad $u Department of Microbiology and Molecular Genetics, Institute for Biomedical Research IMRIC, Hebrew University, Hadassah Medical School, 91120 Jerusalem, Israel.
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$a Sojka, Daniel $u Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, 37005 Ceske Budejovice, Czech Republic.
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$a Kopáček, Petr $u Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, 37005 Ceske Budejovice, Czech Republic.
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$a Marešová, Lucie $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic.
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$a Vondrášek, Jiří $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic.
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$a Horn, Martin $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic.
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$a Schueler-Furman, Ora $u Department of Microbiology and Molecular Genetics, Institute for Biomedical Research IMRIC, Hebrew University, Hadassah Medical School, 91120 Jerusalem, Israel.
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$a Mareš, Michael $u Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, 16610 Prague, Czech Republic. Electronic address: mares@uochb.cas.cz.
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