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Transcriptome-based mining and expression profiling of Pythium responsive transcription factors in Zingiber sp
VS. Nath, S. Koyyappurath, TE. Alex, KA. Geetha, L. Augustine, A. Nasser, G. Thomas,
Language English Country Germany
Document type Journal Article
Grant support
No. 38(1397)/14EMR-II
Council of Scientific and Industrial Research
NLK
ProQuest Central
from 2002-04-01 to 1 year ago
Medline Complete (EBSCOhost)
from 2003-07-01 to 1 year ago
Health & Medicine (ProQuest)
from 2002-04-01 to 1 year ago
Public Health Database (ProQuest)
from 2002-04-01 to 1 year ago
- MeSH
- Stress, Physiological MeSH
- Plant Immunity * MeSH
- Evolution, Molecular MeSH
- Pythium pathogenicity MeSH
- Response Elements MeSH
- Plant Proteins genetics metabolism MeSH
- Transcription Factors genetics metabolism MeSH
- Transcriptome * MeSH
- Zingiberaceae genetics immunology microbiology MeSH
- Publication type
- Journal Article MeSH
Transcription factors (TFs) fine-tune the host defense transcriptome in response to pathogen invasions. No information is available on Zingiber zerumbet (Zz) TFs involved in defense response against Pythium myriotylum. Here, we provide a global identification, characterization, and temporal expression profiling of Zz TFs following an incompatible interaction with P. myriotylum using a transcriptome sequencing approach. We identified a total of 903 TFs belonging to 96 families based on their conserved domains. Evolutionary analysis clustered the Zz TFs according to their phylogenetic affinity, providing glimpses of their functional diversities. High throughput expression array analysis highlighted a complex interplay between activating and repressing transcription factors in fine-tuning Zz defense response against P. myriotylum. The high differential modulation of TFs involved in cell wall fortification, lignin biosynthesis, and SA/JA hormone crosstalk allows us to envisage that this mechanism plays a central role in restricting P. myriotylum proliferation in Zz. This study lays a solid foundation and provides valuable resources for the investigation of the evolutionary history and biological functions of Zz TF genes involved in defense response.
Department of Biotechnology Kerala Agricultural University Vellayani Thiruvananthapuram 695522 India
Department of Botany Sacred Heart College Thevara Ernakulam 682013 India
References provided by Crossref.org
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