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Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
SM. Adl, D. Bass, CE. Lane, J. Lukeš, CL. Schoch, A. Smirnov, S. Agatha, C. Berney, MW. Brown, F. Burki, P. Cárdenas, I. Čepička, L. Chistyakova, J. Del Campo, M. Dunthorn, B. Edvardsen, Y. Eglit, L. Guillou, V. Hampl, AA. Heiss, M. Hoppenrath,...
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články, Research Support, N.I.H., Extramural, Research Support, N.I.H., Intramural, práce podpořená grantem, Research Support, U.S. Gov't, Non-P.H.S.
PubMed
30257078
DOI
10.1111/jeu.12691
Knihovny.cz E-zdroje
- MeSH
- biodiverzita * MeSH
- Eukaryota klasifikace MeSH
- fylogeneze * MeSH
- terminologie jako téma * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
- Research Support, N.I.H., Extramural MeSH
- Research Support, N.I.H., Intramural MeSH
- Research Support, U.S. Gov't, Non-P.H.S. MeSH
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
Department of Biological Sciences The University of Alabama Tuscaloosa Alabama 35487 USA
Department of Biological Sciences University of Arkansas Fayetteville Arkansas AR 72701 USA
Department of Biological Sciences University of Rhode Island Kingston Rhode Island 02881 USA
Department of Biology Dalhousie University Halifax B3H 4R2 NS Canada
Department of Biosciences University of Oslo P O Box 1066 Blindern Oslo 0316 Norway
Department of Biosciences University of Salzburg Hellbrunnerstrasse 34 Salzburg A 5020 Austria
Department of Ecology and Evolutionary Biology University of Michigan Ann Arbor Michigan 48109 USA
Department of Genetics and Evolution University of Geneva 1211 Geneva 4 Switzerland
Department of Molecular Phylogenetics and Evolution University of Warsaw Warsaw 02 089 Poland
Department of Zoology Faculty of Science Charles University Vinicna 7 Prague 128 44 Czechia
Institute of Parasitology Biology Centre Czech Academy of Sciences České Budějovice 37005 Czechia
Laboratoire Evolution et Systématique Université Paris XI Orsay 91405 France
School of Applied Sciences Edinburgh Napier University Edinburgh EH11 4BN United Kingdom
Science Research Centre Hosei University 2 17 1 Fujimi Chiyoda ku Tokyo 102 8160 Japan
Senckenberg am Meer DZMB German Centre for Marine Biodiversity Research Wilhelmshaven 26382 Germany
Yantai Institute of Coastal Zone Research Chinese Academy of Science Yantai 264003 China
Citace poskytuje Crossref.org
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- $a Adl, Sina M $u Department of Soil Sciences, College of Agriculture and Bioresources, University of Saskatchewan, Saskatoon, S7N 5A8, SK, Canada.
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- $a Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes / $c SM. Adl, D. Bass, CE. Lane, J. Lukeš, CL. Schoch, A. Smirnov, S. Agatha, C. Berney, MW. Brown, F. Burki, P. Cárdenas, I. Čepička, L. Chistyakova, J. Del Campo, M. Dunthorn, B. Edvardsen, Y. Eglit, L. Guillou, V. Hampl, AA. Heiss, M. Hoppenrath, TY. James, A. Karnkowska, S. Karpov, E. Kim, M. Kolisko, A. Kudryavtsev, DJG. Lahr, E. Lara, L. Le Gall, DH. Lynn, DG. Mann, R. Massana, EAD. Mitchell, C. Morrow, JS. Park, JW. Pawlowski, MJ. Powell, DJ. Richter, S. Rueckert, L. Shadwick, S. Shimano, FW. Spiegel, G. Torruella, N. Youssef, V. Zlatogursky, Q. Zhang,
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- $a This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
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- $a Bass, David $u Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD, United Kingdom. Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Barrack Road, The Nothe, Weymouth, Dorset, DT4 8UB, United Kingdom.
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- $a Lane, Christopher E $u Department of Biological Sciences, University of Rhode Island, Kingston, Rhode Island, 02881, USA.
- 700 1_
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- 700 1_
- $a Berney, Cedric $u CNRS, UMR 7144 (AD2M), Groupe Evolution des Protistes et Ecosystèmes Pélagiques, Station Biologique de Roscoff, Place Georges Teissier, Roscoff, 29680, France.
- 700 1_
- $a Brown, Matthew W $u Department of Biological Sciences, Mississippi State University, Starkville, 39762, Mississippi, USA. Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Starkville, 39762, Mississippi, USA.
- 700 1_
- $a Burki, Fabien $u Department of Organismal Biology, Program in Systematic Biology, Science for Life Laboratory, Uppsala University, Uppsala, 75236, Sweden.
- 700 1_
- $a Cárdenas, Paco $u Pharmacognosy, Department of Medicinal Chemistry, Uppsala University, BMC Box 574, Uppsala, SE-75123, Sweden.
- 700 1_
- $a Čepička, Ivan $u Department of Zoology, Faculty of Science, Charles University, Vinicna 7, Prague, 128 44, Czechia.
- 700 1_
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- 700 1_
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- 700 1_
- $a Dunthorn, Micah $u Department of Ecology, University of Kaiserslautern, Erwin-Schroedinger Street, Kaiserslautern, D-67663, Germany. Department of Eukaryotic Microbiology, University of Duisburg-Essen, Universitätsstrasse 5, Essen, D-45141, Germany.
- 700 1_
- $a Edvardsen, Bente $u Department of Biosciences, University of Oslo, P.O. Box 1066 Blindern, Oslo, 0316, Norway.
- 700 1_
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- 700 1_
- $a Guillou, Laure $u Sorbonne Université, Université Pierre et Marie Curie - Paris 6, CNRS, UMR 7144 (AD2M), Station Biologique de Roscoff, Place Georges Teissier, CS90074, Roscoff, 29688, France.
- 700 1_
- $a Hampl, Vladimír $u Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, Vestec, 252 42, Czechia.
- 700 1_
- $a Heiss, Aaron A $u Department of Invertebrate Zoology, American Museum of Natural History, New York City, New York, 10024, USA.
- 700 1_
- $a Hoppenrath, Mona $u Senckenberg am Meer, DZMB - German Centre for Marine Biodiversity Research, Wilhelmshaven, 26382, Germany.
- 700 1_
- $a James, Timothy Y $u Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, Michigan, 48109, USA.
- 700 1_
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- 700 1_
- $a Karpov, Sergey $u Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, Saint Petersburg, 199034, Russia. Department of Molecular Phylogenetics and Evolution, University of Warsaw, Warsaw, 02-089, Poland.
- 700 1_
- $a Kim, Eunsoo $u Department of Invertebrate Zoology, American Museum of Natural History, New York City, New York, 10024, USA.
- 700 1_
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- 700 1_
- $a Kudryavtsev, Alexander $u Department of Invertebrate Zoology, Faculty of Biology, Saint Petersburg State University, Saint Petersburg, 199034, Russia. Laboratory of Parasitic Worms and Protistology, Zoological Institute RAS, Saint Petersburg, 199034, Russia.
- 700 1_
- $a Lahr, Daniel J G $u Department of Zoology, Institute of Biosciences, University of Sao Paulo, Matao Travessa 14 Cidade Universitaria, Sao Paulo, 05508-090, Sao Paulo, Brazil.
- 700 1_
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- 700 1_
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- $a Lynn, Denis H $u Department of Integrative Biology, University of Guelph, Summerlee Science Complex, Guelph, ON, N1G 2W1, Canada. Department of Zoology, University of British Columbia, 4200-6270 University Blvd., Vancouver, BC, V6T 1Z4, Canada.
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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- 700 1_
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