Detail
Článek
Článek online
FT
Medvik - BMČ
  • Je něco špatně v tomto záznamu ?

Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences

D. Čertnerová, P. Škaloud,

. 2020 ; 126 (6) : 1077-1087. [pub] 20201030

Jazyk angličtina Země Velká Británie

Typ dokumentu časopisecké články, práce podpořená grantem

Perzistentní odkaz   https://www.medvik.cz/link/bmc20027710
E-zdroje Online Plný text

NLK PubMed Central od 1995 do Před 1 rokem
Europe PubMed Central od 1995 do Před 1 rokem
Open Access Digital Library od 1993-01-01
Medline Complete (EBSCOhost) od 1996-01-01 do Před 1 rokem

BACKGROUND AND AIMS: While nuclear DNA content variation and its phenotypic consequences have been well described for animals, vascular plants and macroalgae, much less about this topic is known regarding unicellular algae and protists in general. The dearth of data is especially pronounced when it comes to intraspecific genome size variation. This study attempts to investigate the extent of intraspecific variability in genome size and its adaptive consequences in a microalgal species. METHODS: Propidium iodide flow cytometry was used to estimate the absolute genome size of 131 strains (isolates) of the golden-brown alga Synura petersenii (Chrysophyceae, Stramenopiles), identified by identical internal transcribed spacer (ITS) rDNA barcodes. Cell size, growth rate and genomic GC content were further assessed on a sub-set of strains. Geographic location of 67 sampling sites across the Northern hemisphere was used to extract climatic database data and to evaluate the ecogeographical distribution of genome size diversity. KEY RESULTS: Genome size ranged continuously from 0.97 to 2.02 pg of DNA across the investigated strains. The genome size was positively associated with cell size and negatively associated with growth rate. Bioclim variables were not correlated with genome size variation. No clear trends in the geographical distribution of strains of a particular genome size were detected, and strains of different genome size occasionally coexisted at the same locality. Genomic GC content was significantly associated only with genome size via a quadratic relationship. CONCLUSIONS: Genome size variability in S. petersenii was probably triggered by an evolutionary mechanism operating via gradual changes in genome size accompanied by changes in genomic GC content, such as, for example, proliferation of transposable elements. The variation was reflected in cell size and relative growth rate, possibly with adaptive consequences.

Citace poskytuje Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc20027710
003      
CZ-PrNML
005      
20210114152243.0
007      
ta
008      
210105s2020 xxk f 000 0|eng||
009      
AR
024    7_
$a 10.1093/aob/mcaa133 $2 doi
035    __
$a (PubMed)32686820
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a xxk
100    1_
$a Čertnerová, Dora $u Department of Botany, Faculty of Science, Charles University, Benátská, Prague, Czech Republic.
245    10
$a Substantial intraspecific genome size variation in golden-brown algae and its phenotypic consequences / $c D. Čertnerová, P. Škaloud,
520    9_
$a BACKGROUND AND AIMS: While nuclear DNA content variation and its phenotypic consequences have been well described for animals, vascular plants and macroalgae, much less about this topic is known regarding unicellular algae and protists in general. The dearth of data is especially pronounced when it comes to intraspecific genome size variation. This study attempts to investigate the extent of intraspecific variability in genome size and its adaptive consequences in a microalgal species. METHODS: Propidium iodide flow cytometry was used to estimate the absolute genome size of 131 strains (isolates) of the golden-brown alga Synura petersenii (Chrysophyceae, Stramenopiles), identified by identical internal transcribed spacer (ITS) rDNA barcodes. Cell size, growth rate and genomic GC content were further assessed on a sub-set of strains. Geographic location of 67 sampling sites across the Northern hemisphere was used to extract climatic database data and to evaluate the ecogeographical distribution of genome size diversity. KEY RESULTS: Genome size ranged continuously from 0.97 to 2.02 pg of DNA across the investigated strains. The genome size was positively associated with cell size and negatively associated with growth rate. Bioclim variables were not correlated with genome size variation. No clear trends in the geographical distribution of strains of a particular genome size were detected, and strains of different genome size occasionally coexisted at the same locality. Genomic GC content was significantly associated only with genome size via a quadratic relationship. CONCLUSIONS: Genome size variability in S. petersenii was probably triggered by an evolutionary mechanism operating via gradual changes in genome size accompanied by changes in genomic GC content, such as, for example, proliferation of transposable elements. The variation was reflected in cell size and relative growth rate, possibly with adaptive consequences.
650    _2
$a biologická evoluce $7 D005075
650    12
$a Chrysophyceae $7 D044523
650    _2
$a délka genomu $7 D059646
650    12
$a genom rostlinný $x genetika $7 D018745
650    _2
$a ploidie $7 D011003
655    _2
$a časopisecké články $7 D016428
655    _2
$a práce podpořená grantem $7 D013485
700    1_
$a Škaloud, Pavel $u Department of Botany, Faculty of Science, Charles University, Benátská, Prague, Czech Republic.
773    0_
$w MED00000419 $t Annals of botany $x 1095-8290 $g Roč. 126, č. 6 (2020), s. 1077-1087
856    41
$u https://pubmed.ncbi.nlm.nih.gov/32686820 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y a $z 0
990    __
$a 20210105 $b ABA008
991    __
$a 20210114152241 $b ABA008
999    __
$a ok $b bmc $g 1608045 $s 1118890
BAS    __
$a 3
BAS    __
$a PreBMC
BMC    __
$a 2020 $b 126 $c 6 $d 1077-1087 $e 20201030 $i 1095-8290 $m Annals of botany $n Ann. bot. (Print) $x MED00000419
LZP    __
$a Pubmed-20210105

Najít záznam

Citační ukazatele

Nahrávání dat ...

Možnosti archivace

Nahrávání dat ...