-
Je něco špatně v tomto záznamu ?
Integration of Cryo-EM Model Building Software in Scipion
M. Martínez, A. Jiménez-Moreno, D. Maluenda, E. Ramírez-Aportela, R. Melero, A. Cuervo, P. Conesa, L. Del Caño, YC. Fonseca, R. Sánchez-García, D. Strelak, JJ. Conesa, E. Fernández-Giménez, F. de Isidro, COS. Sorzano, JM. Carazo, R. Marabini
Jazyk angličtina Země Spojené státy americké
Typ dokumentu časopisecké články, práce podpořená grantem
PubMed
31994878
DOI
10.1021/acs.jcim.9b01032
Knihovny.cz E-zdroje
- MeSH
- elektronová kryomikroskopie MeSH
- počítačové zpracování obrazu * MeSH
- průběh práce MeSH
- software * MeSH
- Publikační typ
- časopisecké články MeSH
- práce podpořená grantem MeSH
Advances in cryo-electron microscopy (cryo-EM) have made it possible to obtain structures of large biological macromolecules at near-atomic resolution. This "resolution revolution" has encouraged the use and development of modeling tools able to produce high-quality atomic models from cryo-EM density maps. Unfortunately, many practical problems appear when combining different packages in the same processing workflow, which make difficult the use of these tools by non-experts and, therefore, reduce their utility. We present here a major extension of the image processing framework Scipion that provides inter-package integration in the model building area and full tracking of the complete workflow, from image processing to structure validation.
CNB CSIC C Darwin 3 28049 Madrid Spain
Institute of Computer Science Masaryk University Botanická 68a 60200 Brno Czech Republic
Citace poskytuje Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc21020543
- 003
- CZ-PrNML
- 005
- 20210830102208.0
- 007
- ta
- 008
- 210728s2020 xxu f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.1021/acs.jcim.9b01032 $2 doi
- 035 __
- $a (PubMed)31994878
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a xxu
- 100 1_
- $a Martínez, M $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 245 10
- $a Integration of Cryo-EM Model Building Software in Scipion / $c M. Martínez, A. Jiménez-Moreno, D. Maluenda, E. Ramírez-Aportela, R. Melero, A. Cuervo, P. Conesa, L. Del Caño, YC. Fonseca, R. Sánchez-García, D. Strelak, JJ. Conesa, E. Fernández-Giménez, F. de Isidro, COS. Sorzano, JM. Carazo, R. Marabini
- 520 9_
- $a Advances in cryo-electron microscopy (cryo-EM) have made it possible to obtain structures of large biological macromolecules at near-atomic resolution. This "resolution revolution" has encouraged the use and development of modeling tools able to produce high-quality atomic models from cryo-EM density maps. Unfortunately, many practical problems appear when combining different packages in the same processing workflow, which make difficult the use of these tools by non-experts and, therefore, reduce their utility. We present here a major extension of the image processing framework Scipion that provides inter-package integration in the model building area and full tracking of the complete workflow, from image processing to structure validation.
- 650 _2
- $a elektronová kryomikroskopie $7 D020285
- 650 12
- $a počítačové zpracování obrazu $7 D007091
- 650 12
- $a software $7 D012984
- 650 _2
- $a průběh práce $7 D057188
- 655 _2
- $a časopisecké články $7 D016428
- 655 _2
- $a práce podpořená grantem $7 D013485
- 700 1_
- $a Jiménez-Moreno, A $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Maluenda, D $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Ramírez-Aportela, E $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Melero, R $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Cuervo, A $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Conesa, P $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Del Caño, L $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Fonseca, Y C $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Sánchez-García, R $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Strelak, D $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain $u Institute of Computer Science, Masaryk University, Botanická 68a, 60200 Brno, Czech Republic
- 700 1_
- $a Conesa, J J $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Fernández-Giménez, E $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a de Isidro, F $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Sorzano, C O S $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Carazo, J M $u CNB-CSIC, C/Darwin 3, 28049 Madrid, Spain
- 700 1_
- $a Marabini, R $u Escuela Politécnica, Universidad Autónoma de Madrid, C/Francisco Tomás y Valiente 11, 28049 Madrid, Spain
- 773 0_
- $w MED00008945 $t Journal of chemical information and modeling $x 1549-960X $g Roč. 60, č. 5 (2020), s. 2533-2540
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/31994878 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y p $z 0
- 990 __
- $a 20210728 $b ABA008
- 991 __
- $a 20210830102208 $b ABA008
- 999 __
- $a ok $b bmc $g 1691170 $s 1140989
- BAS __
- $a 3
- BAS __
- $a PreBMC
- BMC __
- $a 2020 $b 60 $c 5 $d 2533-2540 $e 20200211 $i 1549-960X $m Journal of chemical information and modeling $n J Chem Inf Model $x MED00008945
- LZP __
- $a Pubmed-20210728