-
Something wrong with this record ?
Multivariate Independent Component Analysis Identifies Patients in Newborn Screening Equally to Adjusted Reference Ranges
Š. Kouřil, J. de Sousa, K. Fačevicová, A. Gardlo, C. Muehlmann, K. Nordhausen, D. Friedecký, T. Adam
Status not-indexed Language English Country Switzerland
Document type Journal Article
NLK
Directory of Open Access Journals
from 2015
PubMed Central
from 2018
ProQuest Central
from 2020-01-01
Open Access Digital Library
from 2015-01-01
Health & Medicine (ProQuest)
from 2020-01-01
ROAD: Directory of Open Access Scholarly Resources
from 2015
PubMed
37873851
DOI
10.3390/ijns9040060
Knihovny.cz E-resources
- Publication type
- Journal Article MeSH
Newborn screening (NBS) of inborn errors of metabolism (IEMs) is based on the reference ranges established on a healthy newborn population using quantile statistics of molar concentrations of biomarkers and their ratios. The aim of this paper is to investigate whether multivariate independent component analysis (ICA) is a useful tool for the analysis of NBS data, and also to address the structure of the calculated ICA scores. NBS data were obtained from a routine NBS program performed between 2013 and 2022. ICA was tested on 10,213/150 free-diseased controls and 77/20 patients (9/3 different IEMs) in the discovery/validation phases, respectively. The same model computed during the discovery phase was used in the validation phase to confirm its validity. The plots of ICA scores were constructed, and the results were evaluated based on 5sd levels. Patient samples from 7/3 different diseases were clearly identified as 5sd-outlying from control groups in both phases of the study. Two IEMs containing only one patient each were separated at the 3sd level in the discovery phase. Moreover, in one latent variable, the effect of neonatal birth weight was evident. The results strongly suggest that ICA, together with an interpretation derived from values of the "average member of the score structure", is generally applicable and has the potential to be included in the decision process in the NBS program.
Department of Clinical Biochemistry University Hospital Olomouc 779 00 Olomouc Czech Republic
Department of Mathematics and Statistics University of Jyväskylä 40014 Jyväskylä Finland
Faculty of Health Care The Slovak Medical University in Bratislava 974 05 Banská Bystrica Slovakia
References provided by Crossref.org
- 000
- 00000naa a2200000 a 4500
- 001
- bmc23022682
- 003
- CZ-PrNML
- 005
- 20240715111945.0
- 007
- ta
- 008
- 240105s2023 sz f 000 0|eng||
- 009
- AR
- 024 7_
- $a 10.3390/ijns9040060 $2 doi
- 035 __
- $a (PubMed)37873851
- 040 __
- $a ABA008 $b cze $d ABA008 $e AACR2
- 041 0_
- $a eng
- 044 __
- $a sz
- 100 1_
- $a Kouřil, Štěpán $u Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic $7 xx0313061
- 245 10
- $a Multivariate Independent Component Analysis Identifies Patients in Newborn Screening Equally to Adjusted Reference Ranges / $c Š. Kouřil, J. de Sousa, K. Fačevicová, A. Gardlo, C. Muehlmann, K. Nordhausen, D. Friedecký, T. Adam
- 520 9_
- $a Newborn screening (NBS) of inborn errors of metabolism (IEMs) is based on the reference ranges established on a healthy newborn population using quantile statistics of molar concentrations of biomarkers and their ratios. The aim of this paper is to investigate whether multivariate independent component analysis (ICA) is a useful tool for the analysis of NBS data, and also to address the structure of the calculated ICA scores. NBS data were obtained from a routine NBS program performed between 2013 and 2022. ICA was tested on 10,213/150 free-diseased controls and 77/20 patients (9/3 different IEMs) in the discovery/validation phases, respectively. The same model computed during the discovery phase was used in the validation phase to confirm its validity. The plots of ICA scores were constructed, and the results were evaluated based on 5sd levels. Patient samples from 7/3 different diseases were clearly identified as 5sd-outlying from control groups in both phases of the study. Two IEMs containing only one patient each were separated at the 3sd level in the discovery phase. Moreover, in one latent variable, the effect of neonatal birth weight was evident. The results strongly suggest that ICA, together with an interpretation derived from values of the "average member of the score structure", is generally applicable and has the potential to be included in the decision process in the NBS program.
- 590 __
- $a NEINDEXOVÁNO
- 655 _2
- $a časopisecké články $7 D016428
- 700 1_
- $a de Sousa, Julie $u Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic $u Department of Mathematical Analysis and Applications of Mathematics, Faculty of Science, Palacký University Olomouc, 779 00 Olomouc, Czech Republic
- 700 1_
- $a Fačevicová, Kamila $u Department of Mathematical Analysis and Applications of Mathematics, Faculty of Science, Palacký University Olomouc, 779 00 Olomouc, Czech Republic $7 xx0232847
- 700 1_
- $a Gardlo, Alžběta $u Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic $u Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic $7 xx0317549
- 700 1_
- $a Muehlmann, Christoph $u Institute of Statistics & Mathematical Methods in Economics, Vienna University of Technology, 1040 Vienna, Austria
- 700 1_
- $a Nordhausen, Klaus $u Department of Mathematics and Statistics, University of Jyväskylä, 40014 Jyväskylä, Finland $1 https://orcid.org/0000000237588501
- 700 1_
- $a Friedecký, David $u Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic $1 https://orcid.org/0000000234489073 $7 xx0142900
- 700 1_
- $a Adam, Tomáš $u Department of Clinical Biochemistry, University Hospital Olomouc, 779 00 Olomouc, Czech Republic $u Laboratory of Metabolomics, Institute of Molecular and Translational Medicine, Palacký University Olomouc, 779 00 Olomouc, Czech Republic $u Faculty of Health Care, The Slovak Medical University in Bratislava, 974 05 Banská Bystrica, Slovakia
- 773 0_
- $w MED00205983 $t International journal of neonatal screening $x 2409-515X $g Roč. 9, č. 4 (2023)
- 856 41
- $u https://pubmed.ncbi.nlm.nih.gov/37873851 $y Pubmed
- 910 __
- $a ABA008 $b sig $c sign $y - $z 0
- 990 __
- $a 20240105 $b ABA008
- 991 __
- $a 20240715111943 $b ABA008
- 999 __
- $a ok $b bmc $g 2036359 $s 1209127
- BAS __
- $a 3
- BAS __
- $a PreBMC-PubMed-not-MEDLINE
- BMC __
- $a 2023 $b 9 $c 4 $e 20231020 $i 2409-515X $m International journal of neonatal screening $n Int. j. neonatal screen. $x MED00205983
- LZP __
- $a Pubmed-20240105