• Je něco špatně v tomto záznamu ?

Lentzea sokolovensis sp. nov., Lentzea kristufekii sp. nov. and Lentzea miocenica sp. nov., rare actinobacteria from Miocene lacustrine sediment of the Sokolov Coal Basin, Czech Republic

AC. Lara, L. Kotrbová, M. Keller, I. Nouioui, M. Neumann-Schaal, Y. Mast, A. Chroňáková

. 2024 ; 74 (4) : . [pub] -

Jazyk angličtina Země Anglie, Velká Británie

Typ dokumentu časopisecké články

Perzistentní odkaz   https://www.medvik.cz/link/bmc24014397

The taxonomic position of three actinobacterial strains, BCCO 10_0061T, BCCO 10_0798T, and BCCO 10_0856T, recovered from bare soil in the Sokolov Coal Basin, Czech Republic, was established using a polyphasic approach. The multilocus sequence analysis based on 100 single-copy genes positioned BCCO 10_0061T in the same cluster as Lentzea waywayandensis, strain BCCO 10_0798T in the same cluster as Lentzea flaviverrucosa, Lentzea californiensis, Lentzea violacea, and Lentzea albidocapillata, and strain BCCO 10_0856T clustered together with Lentzea kentuckyensis and Lentzea alba. Morphological and chemotaxonomic characteristics of these strains support their assignment to the genus Lentzea. In all three strains, MK-9(H4) accounted for more than 80 % of the isoprenoid quinone. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The whole-cell sugars were rhamnose, ribose, mannose, glucose, and galactose. The major fatty acids (>10 %) were iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, and C16 : 0. The polar lipids were diphosphatidylglycerol, methyl-phosphatidylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, and phosphatidylinositol. The genomic DNA G+C content of strains (mol%) was 68.8 for BCCO 10_0061T, 69.2 for BCCO 10_0798T, and 68.5 for BCCO 10_0856T. The combination of digital DNA-DNA hybridization results, average nucleotide identity values and phenotypic characteristics of BCCO 10_0061T, BCCO 10_0798T, and BCCO 10_0856T distinguishes them from their closely related strains. Bioinformatic analysis of the genome sequences of the strains revealed several biosynthetic gene clusters (BGCs) with identities >50 % to already known clusters, including BGCs for geosmin, coelichelin, ε-poly-l-lysine, and erythromycin-like BGCs. Most of the identified BGCs showed low similarity to known BGCs (<50 %) suggesting their genetic potential for the biosynthesis of novel secondary metabolites. Based on the above results, each strain represents a novel species of the genus Lentzea, for which we propose the name Lentzea sokolovensis sp. nov. for BCCO 10_0061T (=DSM 116175T), Lentzea kristufekii sp. nov. for BCCO 10_0798T (=DSM 116176T), and Lentzea miocenica sp. nov. for BCCO 10_0856T (=DSM 116177T).

Citace poskytuje Crossref.org

000      
00000naa a2200000 a 4500
001      
bmc24014397
003      
CZ-PrNML
005      
20240905133826.0
007      
ta
008      
240725s2024 enk f 000 0|eng||
009      
AR
024    7_
$a 10.1099/ijsem.0.006335 $2 doi
035    __
$a (PubMed)38630118
040    __
$a ABA008 $b cze $d ABA008 $e AACR2
041    0_
$a eng
044    __
$a enk
100    1_
$a Lara, Ana Catalina $u Biology Centre Czech Academy of Sciences, Institute of Soil Biology and BiogeochemistryNaSádkách 7, 37005 České Budějovice, Czech Republic $u University of Chemistry, and Technology, Prague, Faculty of Food and Biochemical Technology, Department of Biochemistry and Microbiology, Technická 5, 16628 Prague, Czech Republic
245    10
$a Lentzea sokolovensis sp. nov., Lentzea kristufekii sp. nov. and Lentzea miocenica sp. nov., rare actinobacteria from Miocene lacustrine sediment of the Sokolov Coal Basin, Czech Republic / $c AC. Lara, L. Kotrbová, M. Keller, I. Nouioui, M. Neumann-Schaal, Y. Mast, A. Chroňáková
520    9_
$a The taxonomic position of three actinobacterial strains, BCCO 10_0061T, BCCO 10_0798T, and BCCO 10_0856T, recovered from bare soil in the Sokolov Coal Basin, Czech Republic, was established using a polyphasic approach. The multilocus sequence analysis based on 100 single-copy genes positioned BCCO 10_0061T in the same cluster as Lentzea waywayandensis, strain BCCO 10_0798T in the same cluster as Lentzea flaviverrucosa, Lentzea californiensis, Lentzea violacea, and Lentzea albidocapillata, and strain BCCO 10_0856T clustered together with Lentzea kentuckyensis and Lentzea alba. Morphological and chemotaxonomic characteristics of these strains support their assignment to the genus Lentzea. In all three strains, MK-9(H4) accounted for more than 80 % of the isoprenoid quinone. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The whole-cell sugars were rhamnose, ribose, mannose, glucose, and galactose. The major fatty acids (>10 %) were iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, and C16 : 0. The polar lipids were diphosphatidylglycerol, methyl-phosphatidylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, phosphatidylglycerol, and phosphatidylinositol. The genomic DNA G+C content of strains (mol%) was 68.8 for BCCO 10_0061T, 69.2 for BCCO 10_0798T, and 68.5 for BCCO 10_0856T. The combination of digital DNA-DNA hybridization results, average nucleotide identity values and phenotypic characteristics of BCCO 10_0061T, BCCO 10_0798T, and BCCO 10_0856T distinguishes them from their closely related strains. Bioinformatic analysis of the genome sequences of the strains revealed several biosynthetic gene clusters (BGCs) with identities >50 % to already known clusters, including BGCs for geosmin, coelichelin, ε-poly-l-lysine, and erythromycin-like BGCs. Most of the identified BGCs showed low similarity to known BGCs (<50 %) suggesting their genetic potential for the biosynthesis of novel secondary metabolites. Based on the above results, each strain represents a novel species of the genus Lentzea, for which we propose the name Lentzea sokolovensis sp. nov. for BCCO 10_0061T (=DSM 116175T), Lentzea kristufekii sp. nov. for BCCO 10_0798T (=DSM 116176T), and Lentzea miocenica sp. nov. for BCCO 10_0856T (=DSM 116177T).
650    _2
$a fosfatidylethanolaminy $7 D010714
650    _2
$a zastoupení bazí $7 D001482
650    _2
$a mastné kyseliny $x chemie $7 D005227
650    _2
$a fylogeneze $7 D010802
650    _2
$a sekvenční analýza DNA $7 D017422
650    _2
$a RNA ribozomální 16S $x genetika $7 D012336
650    _2
$a DNA bakterií $x genetika $7 D004269
650    _2
$a techniky typizace bakterií $7 D015373
650    12
$a Actinomycetales $7 D000192
650    12
$a Actinobacteria $7 D039903
650    _2
$a Bacteria $7 D001419
650    _2
$a uhlí $7 D003031
651    _2
$a Česká republika $7 D018153
655    _2
$a časopisecké články $7 D016428
700    1_
$a Kotrbová, Lucie $u Biology Centre Czech Academy of Sciences, Institute of Soil Biology and BiogeochemistryNaSádkách 7, 37005 České Budějovice, Czech Republic $u University of South Bohemia, Faculty of Science, Branišovská 31, 37005 České Budějovice, Czech Republic
700    1_
$a Keller, Moritz $u Biology Centre Czech Academy of Sciences, Institute of Soil Biology and BiogeochemistryNaSádkách 7, 37005 České Budějovice, Czech Republic $u University of South Bohemia, Faculty of Science, Branišovská 31, 37005 České Budějovice, Czech Republic
700    1_
$a Nouioui, Imen $u Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany
700    1_
$a Neumann-Schaal, Meina $u Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany
700    1_
$a Mast, Yvonne $u Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany
700    1_
$a Chroňáková, Alica $u Biology Centre Czech Academy of Sciences, Institute of Soil Biology and BiogeochemistryNaSádkách 7, 37005 České Budějovice, Czech Republic
773    0_
$w MED00006002 $t International journal of systematic and evolutionary microbiology $x 1466-5034 $g Roč. 74, č. 4 (2024)
856    41
$u https://pubmed.ncbi.nlm.nih.gov/38630118 $y Pubmed
910    __
$a ABA008 $b sig $c sign $y - $z 0
990    __
$a 20240725 $b ABA008
991    __
$a 20240905133820 $b ABA008
999    __
$a ok $b bmc $g 2143895 $s 1226263
BAS    __
$a 3
BAS    __
$a PreBMC-MEDLINE
BMC    __
$a 2024 $b 74 $c 4 $e - $i 1466-5034 $m International journal of systematic and evolutionary microbiology $n Int J Syst Evol Microbiol $x MED00006002
LZP    __
$a Pubmed-20240725

Najít záznam

Citační ukazatele

Nahrávání dat ...

    Možnosti archivace